BGDB specifications


Unique identifier OMICS_20946
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No


  • Primates
    • Homo sapiens


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Publication for BGDB

BGDB citations


Silencing PRDM14 expression by an innovative RNAi therapy inhibits stemness, tumorigenicity, and metastasis of breast cancer

PMCID: 5564528
PMID: 28423353
DOI: 10.18632/oncotarget.16776

[…] ling, and cell adhesion (Figure ).In PRDM14-transfected MDA-MB-231 cells, PRDM14 co-occupied half of the hypermethylated CpG sites associated with the TSS (Figure ). Using the Bivalent Gene Database (BGDB) [], we found that 86.0% and 0.7% of bivalent genes observed in human ES cells corresponded to PRDM14-occupied genes in PRDM14-overexpressing MDA-MB-231 and HCC1937 cells, respectively (Figure ). […]


Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes

PMCID: 4909311
PMID: 27037832
DOI: 10.1093/dnares/dsw012

[…] s. A NJ-tree based on the alignment was suggested to contain the following five known phylogenetic groups: SSI, SSII, SSIII, SSIV, and GBSS (Supplementary Fig. S4). The SS sequences obtained from the BGDB belonged to four of the five classes. This suggests that the BGDB can be used to identify agronomically important genes. However, the previously deposited GBSS (HW041459) sequence is not identica […]

BGDB institution(s)
Department of Electronics, School of Information Science and Technology, Sun Yat-Sen University, Guangzhou, China
BGDB funding source(s)
Supported by the National Natural Science Foundation of China (NSFC) [61174163].

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