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Protocols

BGI-RIS specifications

Information


Unique identifier OMICS_04473
Name BGI-RIS
Alternative name Rice Information System
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Taxon


  • Plants and Fungi
    • Oryza sativa

Maintainers


  • person_outline Jun Wang
  • person_outline Bgi-Ris Team

Publication for Rice Information System

library_books

BGI-RIS V2.

2007 Methods Mol Biol
PMID: 18287698

BGI-RIS citations

 (4)
library_books

Genetic factors underlying boron toxicity tolerance in rice: genome wide association study and transcriptomic analysis

2016
J Exp Bot
PMCID: 5444448
PMID: 28204664
DOI: 10.1093/jxb/erw423

[…] ped to coding sequences of japonica rice from the MSU database (http://rice.plantbiology.msu.edu) using MUMmer 3.0 (), then probe sequences were blasted against the BGI database in the RISE platform (Rice Information System, http://rise2.genomics.org.cn/page/rice/index.jsp) to obtain the gene ID and Gene Ontology (GO) information. […]

library_books

Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations

2008
Int J Plant Genomics
PMCID: 2408710
PMID: 18528527
DOI: 10.1155/2008/524847

[…] esearch labs around the world can be screened for specific genes. Data generated by reverse genetics studies are publicly available and have been stored in curated databases such as the International Rice Information System (IRIS) [], OryzaGenesDB [], and EU-OSTID [] for greater dissemination to the wider scientific community.Microarrays have been widely adopted by plant scientists to study gene […]

call_split

Analysis of 142 genes resolves the rapid diversification of the rice genus

2008
Genome Biol
PMCID: 2397501
PMID: 18315873
DOI: 10.1186/gb-2008-9-3-r49
call_split See protocol

[…] We used the BGI-RIS Database [] for gene screening. Similar to the strategy used by Yu et al. [], we extracted the protein sequences with nr-KOME cDNA [] evidence and then conducted extensive searches against the […]

library_books

Global genome expression analysis of rice in response to drought and high salinity stresses in shoot, flag leaf, and panicle

2007
Plant Mol Biol
PMCID: 1805039
PMID: 17225073
DOI: 10.1007/s11103-006-9111-1

[…] GO terms used in rice gene functional annotations were downloaded from the BGI-RIS database at http://rise.genomics.org.cn (Zhao et al., ). For biochemical pathway analysis, we classified genes by associated biochemical pathway(s) using the AraCyc database (http://www.arabid […]

Citations

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BGI-RIS institution(s)
Rice Information System, the Beijing Genomics Institute, Chinese Academy of Sciences, Beijing, China
BGI-RIS funding source(s)
Supported by the Chinese Academy of Sciences, Commission for Economy Planning, Ministry of Science & Technology, National Natural Science Foundation of China, Zhejiang University and China National Grid.

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