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Bgmix specifications

Information


Unique identifier OMICS_15782
Name Bgmix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.40.0
Stability Stable
Requirements
KernSmooth, R(>=2.3.1)
Maintained Yes

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Documentation


Maintainer


  • person_outline Alex Lewin

Bgmix citations

 (5)
library_books

The Common Marmoset Genome Provides Insight into Primate Biology and Evolution

2014
Nat Genet
PMCID: 4138798
PMID: 25038751
DOI: 10.1038/ng.3042

[…] es were compared to the marmoset genome with TBLASTN algorithm using the tbex script and the locations of marmoset protease genes predicted with bsniffer. Putative novel proteases were predicted with bgmix () and visually inspected. […]

library_books

Birth and Death of KLK3 and KLK2 in Primates: Evolution Driven by Reproductive Biology

2012
Genome Biol Evol
PMCID: 3542562
PMID: 23204305
DOI: 10.1093/gbe/evs111

[…] genes were annotated based on alignments to human RefSeq cDNA and protein sequences with the BATI algorithm (Blast, Annotate, Tune, Iterate) using four Perl scripts—Tbex, BlastSniffer, GeneTuner, and bgmix—available at http://degradome.uniovi.es/downloads.html (last accessed December 10, 2012). Briefly, BATI allows the annotation in the target genome of all orthologs and paralogs from the input se […]

library_books

Does Perceptual Learning Suffer from Retrograde Interference?

2010
PLoS One
PMCID: 2998421
PMID: 21151868
DOI: 10.1371/journal.pone.0014161

[…] onger than the retrograde interference (see , condition Background B). Surprisingly, performance was not disrupted when textures A and B were presented randomly interleaved trialwise (see , condition BGmix). These results contrast with the present study because, first, learning was not disrupted by sessionwise training, and second, in our previous studies, roving disrupted the learning –. Another […]

library_books

Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals

2010
BMC Genomics
PMCID: 2865498
PMID: 20359326
DOI: 10.1186/1471-2164-11-220

[…] rning zebra finch, submitted). Protease sequences were found and curated with the BATI algorithm (Blast, Annotate, Tune, Iterate), using four in-house Perl scripts: Tbex, BlastSniffer, GeneTuner, and BGmix http://degradome.uniovi.es/downloads. We started with a previously assembled set including curated human [] and chicken http://www.ensembl.org protease sequences. Each protein sequence in this s […]

library_books

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips

2007
BMC Bioinformatics
PMCID: 2216047
PMID: 17997843
DOI: 10.1186/1471-2105-8-439

[…] o give a preliminary estimate of the number of differentially expressed genes (Figure ) []. A more thorough approach to the problem of classifying genes by differential expression may be found in the BGmix Bioconductor package — an implementation of a fully Bayesian mixture model for differential expression – which can analyse BGX output directly (Lewin, Bochkina and Richardson: Fully Bayesian mix […]

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