Bhageerath statistics

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Bhageerath specifications

Information


Unique identifier OMICS_10264
Name Bhageerath
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline B. Jayaram <>

Publication for Bhageerath

Bhageerath in publications

 (6)
PMCID: 4906314
PMID: 27296892
DOI: 10.1038/srep27738

[…] experiments ± se., model of the aβ(1-42) peptide was constructed using as templates the aβ(1-16) structures 1ze7 and 4f37 (pdb ids) and the ab initio model of aβ(1-42) built using the server bhageerath. the resulting model of aβ(1-42) was minimized in the amber99 force field with the moe program version 2013.08. modeling of the aβ(1-42):na,k-atpase complex was performed using […]

PMCID: 4559291
PMID: 26338054
DOI: 10.1186/s12976-015-0014-1

[…] sequence based on the input amino acid sequence, fold recognition, template-target alignment, and template-based modelling by modeller []. the missing residues with no fragments are modelled using bhageerath ab initio modelling. in their study, they showed that bhageerath-h strgen performs better than rosetta and i-tasser []., the robetta server (http://robetta.bakerlab.org) is an automated […]

PMCID: 4464539
PMID: 26124567
DOI: 10.6026/97320630011236

[…] the target-template alignment results (). in addition to target-template alignment, the three-dimensional structure of e6 protein sequence were constructed using five different servers viz., bhageerath (http: // www.scfbioiitd.res.in/bhageerath /index.jsp/), cph model (http: //www.cbs.dtu.dk / services /cphmodels/), geno3d (http://geno3dpbil.ibcp.fr), […]

PMCID: 3797562
PMID: 24279005
DOI: 10.1002/cam4.42

[…] for whole-genome analysis (chemgenome, national human genome research institute, national institutes of health, bethesda, maryland, http://www.genome.gov), tertiary structure prediction of proteins (bhageerath and bhageerath-h), and protein/dna-targeted lead molecule design (sanjeevini) was discussed. these methods can be configured into an assembly line to deliver hit molecules from genomic […]

PMCID: 3268625
PMID: 22303367
DOI: 10.3389/fgene.2011.00072

[…] and hhsearch with the significant cutoffs for template identification (blast: e-value = 0.0001; hhsearch: e-value = 0.0001 and p-value = 50). therefore, an ab initio model was constructed using bhageerath server. bhageerath, an energy based approach which narrow downs the search space of tertiary structures employing sequence and secondary structure information as building stage; and later […]


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Bhageerath institution(s)
Department of Chemistry and Supercomputing Facility for Bioinformatics and Computational Biology, Indian Institute of Technology Delhi Hauz Khas, New Delhi, India

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