BiasAway specifications

Information


Unique identifier OMICS_27691
Name BiasAway
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Wyeth Wasserman

Publication for BiasAway

BiasAway citation

call_split

Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP seq data

2015
BMC Bioinformatics
PMCID: 4436866
PMID: 25927199
DOI: 10.1186/s12859-015-0573-5
call_split See protocol

[…] aks for particular TFs (each peak shifted by its length + 40 nt along the chromosome),random sequences of length and dinucleotide composition following ChIP-seq peaks for particular TFs, generated by BiasAway [],random sequences of length following ChIP-seq peaks for particular TFs, generated by 3rd order Markov chains learned on these peaks. all human third exons, excluding exons with UTRs (commo […]

BiasAway institution(s)
Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, Canada; Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada; Universidad Autónoma de Madrid, Biochemistry, Madrid, Spain; Centre for Molecular Medicine and Therapeutics, Vancouver, BC, Canada
BiasAway funding source(s)
Supported by the National Institutes of Health (USA) grant 1R01GM084875, the Canadian Institutes for Health Research, the National Science and Engineering Research Council (NSERC), and GenomeBC and GenomeCanada (ABC4DE Project); the Canadian Institutes of Health Research and the Michael Smith Foundation for Health Research; a Fundación Caja Madrid mobility fellowship for visiting professors 2011–2012, and the Spanish Ministry of Science and Innovation, MICINN, grant number SAF2011_24225.

BiasAway reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BiasAway