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BicOverlapper

Allows to visualize complex gene expression analysis results coming from biclustering algorithms. BicOverlapper visualizes the most relevant aspects of the analysis, including expression data, profiling analysis results and functional annotation. It integrates several state-of-the-art numerical methods, such as differential expression analysis, gene set enrichment or biclustering. The tool permits to have an overall view of several expression aspects, from raw data to analysis results and functional annotations.

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BicOverlapper classification

BicOverlapper specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Version:
2.0
Requirements:
R
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

BicOverlapper distribution

versioning

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No versioning.

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BicOverlapper support

Documentation

Maintainer

  • Rodrigo Santamaria <>

Credits

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Publications

Institution(s)

Department of Computer Science, University of Salamanca, Salamanca, Spain; Instituto de Biologia Funcional y Genomica, CSIC/USAL, Salamanca, Spain

Funding source(s)

Supported by the Spanish Government, under the Ministerio de Economia y Competitividad-MINECO (projects BFU2011-28804 and Consolider-Ingenio CSD007- 00015) and by the Ministerio de Ciencia e Innovacion - MICINN (project FI2010-16234).

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.