BicOverlapper statistics

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Citations per year

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Popular tool citations

chevron_left Gene expression clustering Gene set enrichment analysis Differential co-expression analysis chevron_right
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Associated diseases

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BicOverlapper specifications

Information


Unique identifier OMICS_16798
Name BicOverlapper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 2.0
Stability Stable
Requirements
R
Maintained Yes

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Documentation


Maintainer


  • person_outline Rodrigo Santamaria <>

Publications for BicOverlapper

BicOverlapper in publications

 (2)
PMCID: 2636684
PMID: 19040716
DOI: 10.1186/1756-0381-1-12

[…] specialized tools are vislink [], knowledgeeditor [], java editor for biological pathways [], pathway studio [], genepath [], pathscout [], mapman [], metashark [], cnplot [], clans [], gscope [], bicoverlapper [], celestial3d [], metanetter[], hypergraph, vanted [], arena3d, spectralnet [], touchgraph google browser, vislink [], spectralnet [], cnplot []. before this new generation […]

PMCID: 2416653
PMID: 18505552
DOI: 10.1186/1471-2105-9-247

[…] technique is presented which is based on a force-directed graph where biclusters are represented as flexible overlapped groups of genes and conditions. this microarray analysis framework (bicoverlapper), is available at , the main visualization technique, tested with different biclustering results on a real dataset, allows researchers to extract interesting features […]


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BicOverlapper institution(s)
Department of Computer Science, University of Salamanca, Salamanca, Spain; Instituto de Biologia Funcional y Genomica, CSIC/USAL, Salamanca, Spain
BicOverlapper funding source(s)
Supported by the Spanish Government, under the Ministerio de Economia y Competitividad-MINECO (projects BFU2011-28804 and Consolider-Ingenio CSD007- 00015) and by the Ministerio de Ciencia e Innovacion - MICINN (project FI2010-16234).

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