big-Pi predictor statistics

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big-Pi predictor specifications

Information


Unique identifier OMICS_15658
Name big-Pi predictor
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for big-Pi predictor

big-Pi predictor in pipeline

2014
PMCID: 4066178
PMID: 24584662
DOI: 10.1007/s11033-014-3298-z

[…] sites, which are considered as the secretion signal peptides. the targetp 1.1 server confirmed that the two proteins are transported through the secretory pathway. an additional simulation using the big-pi predictor server [] showed that the two proteins have no glycophosphatidylinositol anchor sites. on the whole, the nacrein-like proteins f1 and f2 possess a transmembrane domain and are passed […]


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big-Pi predictor in publications

 (45)
PMCID: 5900052
PMID: 29686663
DOI: 10.3389/fmicb.2018.00700

[…] to the genome-wide sequencing results of strain hhs.015, we analyzed its secreted protein genes using several software of signalpv4.1, tmhmmv2.0, das-tmfilter, hmmtop, prosite scan, psort and big-pi predictor and selected some of the function-unknown putative protein genes to investigate their functions after heterologous expression. according to the disease resistance to apple canker […]

PMCID: 5858678
PMID: 29568220
DOI: 10.1177/1177932218763363

[…] implemented in tritrypdb. the signal peptide prediction was performed using signalp 4.1 server,, and the presence of glycosylphosphatidylinositol (gpi)-anchor regions was assessed using gpi-som 1.5, big-pi predictor, and predgpi-gpi. to predict regions with n- and o-linked glycosylation, we used the netnglyc 1.0 and netoglyc 4.0 servers, respectively. the search for domains was performed using […]

PMCID: 5816549
PMID: 29454308
DOI: 10.1186/s12870-018-1252-2

[…] for prps, the ppv[x][kc] sequence was required. blastp was used to check sequences with a threshold around 10% past. the sp annotations were performed by signalp4.0 [] and the gpi predictions by big-pi predictor [, ]., the collinear relationships of duplicated hrgps in pear were acquired by mcscanx []. collinear gene pairs were presented by circos [], and the genomic location of hrgps […]

PMCID: 5448750
PMID: 28558017
DOI: 10.1371/journal.pone.0177977

[…] first, we screened protein products for cellular localisation with an emphasis on the extracellular environment by assessing the outputs of several software tools available online (psortii, signalp, big-pi predictor and tmhmm; ), along with manual curation based on literature sources. the devaba dataset predominantly comprises proteins found in the nucleus (907 proteins), followed by 293 […]

PMCID: 5346188
PMID: 28284182
DOI: 10.1186/s12859-017-1577-0

[…] approaches make possible the large scale prediction and analysis of secretory proteins from the puccinia helianthi transcriptome. the internet-based software signalp v4.1, targetp v1.01, big-pi predictor, tmhmm v2.0 and protcomp v9.0 were utilized to predict the signal peptides and the signal peptide-dependent secreted proteins among the 35,286 orfs of the p. helianthi […]


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big-Pi predictor institution(s)
European Molecular Biology Laboratory, Heidelberg, Germany; Max-Delbrück-Centrum für Molekulare Medizin, Berlin-Buch, Germany; Research Institute of Molecular Pathology, Vienna, Austria

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