BiG-SCAPE specifications

Information


Unique identifier OMICS_32516
Name BiG-SCAPE
Alternative name Biosynthetic Gene Similarity Clustering and Prospecting Engine
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some GenBank files from the output of antiSMASH with BGC predictions, as well as reference BGCs from the MIBiG repository.
Output data Some files, as well as a visualization that includes multi-locus phylogenies of each Gene Cluster Family made using CORASON.
Output format TSV
Operating system Unix/Linux
Programming languages Python
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Marnix Medema <>
  • person_outline Francisco Barona-Gomez <>

Additional information


https://git.wageningenur.nl/medema-group/BiG-SCAPE/wikis/home

Publication for Biosynthetic Gene Similarity Clustering and Prospecting Engine

BiG-SCAPE institution(s)
Bioinformatics Group, Wageningen University, The Netherlands; Fungal Natural Products Group, Westerdijk Fungal Biodiversity Institute, The Netherlands; Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Cinvestav-IPN, Irapuato, México; Department of Chemistry, Northwestern University, Evanston, Illinois, United States; Carl R. Woese Institute for Genomic Biology and Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Warwick Integrative Synthetic Biology Centre, University of Warwick, Coventry, UK; Novartis Institutes for BioMedical Research, Cambridge, MA, USA; Microbial Genomics and Bioinformatics, Max Planck Institute for Marine Microbiology, Bremen, Germany
BiG-SCAPE funding source(s)
Supported by the Netherlands Organization for Scientific Research (NWO) VENI Grant [863.15.002], the Graduate School for Experimental Plant Sciences (EPS grant); National Institutes of Health Genome to Natural Products Network supplementary award [U01GM110706], CONACyT [grants CBS2017_285746 and 2017_051TAMU]; postdoctoral scholarship 263661; PhD scholarship 204482 , who was also supported by Innovation Secretary of Guanajuato), the National Cancer Institute (NCI) of the National Institutes of Health (NIH) under Award Number F32CA221327 (MWM), the National Institute of General Medical Sciences (NIGMS) under Award Number F32GM120999 (EIP), the National Center for Complementary and Integrative Health (NCCIH) of the NIH under Award Number R01AT009143.

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