Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Command line interface|
|Restrictions to use||None|
No version available
Comparative Genomic Analyses of the Human NPHP1 Locus Reveal Complex Genomic Architecture and Its Regional Evolution in Primates
[…] Great ape CNV data derived from whole genome sequencing (WGS) were downloaded as bigBed files from http://eichlerlab.gs.washington.edu/greatape-cnv/tracks/, and bigBedToBed was used to extract annotations within the region of interest. The human genome hg18 coordinates of the CNV annotations were converted to hg19 coordinates using liftOver with default param […]
Reducing the risk of false discovery enabling identification of biologically significant genome wide methylation status using the HumanMethylation450 array
[…] rofiling (GEO GSE40699), as well as genotyping information (GEO GSM999275), for H1-hESC cells generated by the ENCODE production group . We converted the bigBed files into ASCII bed files using the bigBedToBed method downloaded from the UCSC Genome Browser . The bed files contained base-by-base methylation information including chromosomal location, and methylated score range from 0 to 100. In […]
ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes
[…] e DNA methylation status of the genomic regions corresponding to Kaiso peaks, a BigBed file for GM12878 WGBS data was downloaded from the UCSC genome browser and was converted to BED format using the BigBedtoBed script available at http://hgdownload.soe.ucsc.edu/admin/exe/macOSX.i386/. HOMER  was then used to plot the percent methylation across Kaiso peak regions using the annotatePeaks.pl scrip […]
Looking to check out a full list of citations?
Be the first to review bigBedToBed