Protocols

BiGGEsTS specifications

Information


Unique identifier OMICS_03483
Name BiGGEsTS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for BiGGEsTS

BiGGEsTS citations

 (2)
call_split

Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici)

2018
PLoS One
PMCID: 5927432
PMID: 29709017
DOI: 10.1371/journal.pone.0193922
call_split See protocol

[…] e query) was performed to compare the transcripts with the available protein sequences in the tomato database (Solanum lycopersicum; taxid: 4081). The EST transcripts having WRKY domain were used for BiGGEsTS (Blustering Gene Expression in Time Series) analysis http://kdbio.inescid.pt/software/biggests/ []. The BiGGEsT results revealed the differentially expressed (upregulated and downregulated) W […]

library_books

Comparative histology of muscle in free ranging cetaceans: shallow versus deep diving species

2015
Sci Rep
PMCID: 4626863
PMID: 26514564
DOI: 10.1038/srep15909

[…] is of fibre size in the present study in two groups with different diving behaviour showed that larger areas for both fibre types corresponded to the long duration deep-diving group of cetaceans. The biggests size (CSA and LD) was for the type II fibres in the adult specimens from the Cuvier’s beaked whale’s species in our study. Similar results have been previously reported, showing that the type […]

BiGGEsTS institution(s)
Knowledge Discovery and Bioinformatics (KDBIO) group, INESC-ID, Apartado, Lisboa, Portugal

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