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BiGGEsTS specifications


Unique identifier OMICS_03483
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for BiGGEsTS

BiGGEsTS citations


Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici)

PLoS One
PMCID: 5927432
PMID: 29709017
DOI: 10.1371/journal.pone.0193922

[…] query) was performed to compare the transcripts with the available protein sequences in the tomato database (solanum lycopersicum; taxid: 4081). the est transcripts having wrky domain were used for biggests (blustering gene expression in time series) analysis []. the biggest results revealed the differentially expressed (upregulated and downregulated) […]


Biclustering of Gene Expression Data by Correlation Based Scatter Search

BioData Min
PMCID: 3037342
PMID: 21261986
DOI: 10.1186/1756-0381-4-3

[…] (sscorr11 and sscorr1010 with values m1 = m2 = 1 and m1 = m1 = 10 respectively) and ccc-biclustering [] for yeast data set. biclusters for the ccc-biclustering have been obtained using the tool biggests [] and results for all biclusters (ccc-bi) and for only 100 selected biclusters have been reported. it can be observed that sscorr11 and sscorr1010 obtain a percentage of enriched biclusters […]


Maximization of negative correlations in time course gene expression data for enhancing understanding of molecular pathways

Nucleic Acids Res
PMCID: 2800212
PMID: 19854949
DOI: 10.1093/nar/gkp822

[…] cheng & church biclustering method (cc) (,), the order preserving sub-matrix algorithm (opsm) (,) and e-ccc-biclustering (e-ccc) (). all of their implementation are available at bicat () or at biggests ()., it's; specially noted that the notion of ccc-biclusters () and its extension e-ccc-biclusters are closely related to our concept of aie patterns, in particular when the sign-change rule […]

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BiGGEsTS institution(s)
Knowledge Discovery and Bioinformatics (KDBIO) group, INESC-ID, Apartado, Lisboa, Portugal

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