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BiGGEsTS specifications

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Unique identifier OMICS_03483
Name BiGGEsTS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for BiGGEsTS

BiGGEsTS citations

 (3)
library_books

Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici)

2018
PLoS One
PMCID: 5927432
PMID: 29709017
DOI: 10.1371/journal.pone.0193922

[…] query) was performed to compare the transcripts with the available protein sequences in the tomato database (solanum lycopersicum; taxid: 4081). the est transcripts having wrky domain were used for biggests (blustering gene expression in time series) analysis http://kdbio.inescid.pt/software/biggests/ []. the biggest results revealed the differentially expressed (upregulated and downregulated) […]

library_books

Biclustering of Gene Expression Data by Correlation Based Scatter Search

2011
BioData Min
PMCID: 3037342
PMID: 21261986
DOI: 10.1186/1756-0381-4-3

[…] (sscorr11 and sscorr1010 with values m1 = m2 = 1 and m1 = m1 = 10 respectively) and ccc-biclustering [] for yeast data set. biclusters for the ccc-biclustering have been obtained using the tool biggests [] and results for all biclusters (ccc-bi) and for only 100 selected biclusters have been reported. it can be observed that sscorr11 and sscorr1010 obtain a percentage of enriched biclusters […]

library_books

Maximization of negative correlations in time course gene expression data for enhancing understanding of molecular pathways

2009
Nucleic Acids Res
PMCID: 2800212
PMID: 19854949
DOI: 10.1093/nar/gkp822

[…] cheng & church biclustering method (cc) (,), the order preserving sub-matrix algorithm (opsm) (,) and e-ccc-biclustering (e-ccc) (). all of their implementation are available at bicat () or at biggests ()., it's; specially noted that the notion of ccc-biclusters () and its extension e-ccc-biclusters are closely related to our concept of aie patterns, in particular when the sign-change rule […]


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BiGGEsTS institution(s)
Knowledge Discovery and Bioinformatics (KDBIO) group, INESC-ID, Apartado, Lisboa, Portugal

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