BiGGR specifications

Information


Unique identifier OMICS_02655
Name BiGGR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
R(>=2.14.0), stringr, rsbml, hyperdraw, LIM, hypergraph, limSolve
Maintained Yes

Versioning


No version available

Documentation


BiGGR citation

library_books

Using Bioconductor Package BiGGR for Metabolic Flux Estimation Based on Gene Expression Changes in Brain

2015
PLoS One
PMCID: 4373785
PMID: 25806817
DOI: 10.1371/journal.pone.0119016

[…] ed fluxes, subsets of the metabolites in the model representing the glycolytic pathway and parts of the PPP (, left) and the citric acid cycle (, right), respectively, are automatically plotted using BiGGR.Grey boxes represent metabolites, edges (arrows) represent reactions. Labels for boxes and edges show the Recon 1 identifiers for metabolites and reactions, respectively. Estimated flux values i […]

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