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BIGpre specifications


Unique identifier OMICS_01035
Name BIGpre
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format Tab-delimited text, R file (for plotting)
Biological technology Illumina, Roche
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Songnian Hu

Publication for BIGpre

BIGpre citation


Effect of method of deduplication on estimation of differential gene expression using RNA seq

PMCID: 5357343
PMID: 28321364
DOI: 10.7717/peerj.3091

[…] account sequencing errors) reads are identified, after which one read from each cluster is retained and others are discarded. a number of widely used programs are based on this approach, including bigpre (), cd-hit-454 (), fastuniq (), fulcrum (), jatac (). these programs were developed and are used mainly for the 454 sequencing technology, where the number of reads is moderate (from thousands […]

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BIGpre institution(s)
CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; James D Watson Institute of Genome Sciences, Zhejiang University, Hangzhou, China

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