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BigWarp specifications

Information


Unique identifier OMICS_25617
Name BigWarp
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Version 3.0.1
Stability Stable
Requirements
ImageJ
Maintained Yes

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Publication for BigWarp

BigWarp in publications

 (2)
PMCID: 5350509
PMID: 28242744
DOI: 10.1083/jcb.201603040

[…] to account for the reduced resolution in the sbf sem images and to prevent false positive assignment of gaps., alignment between light microscopy (lm), sbf sem, and tem was performed using the bigwarp plugin in fiji. we first mapped the tem image onto the final image of the sbf sem image stack at full resolution, using landmarks in 2d. the warped and exported tem image was then appended […]

PMCID: 5394779
PMID: 27445312
DOI: 10.1242/jcs.188433

[…] microscopy and electron microscopy imaging can also introduce non-linear deformations, which cannot be accounted for with a simple affine transformation. to help correct such effects, we used the bigwarp plugin in fiji (http://fiji.sc/bigwarp; bigwarp version 2.1.0, fiji based on imagej 1.50e on windows 10), which harnesses the bigdataviewer system () allowing efficient handling and display […]


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BigWarp institution(s)
HHMI Janelia Research Campus, Ashburn, VA, USA

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