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BiMeta specifications

Information


Unique identifier OMICS_12707
Name BiMeta
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data BiMeta supports both single-end and paired-end reads.
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.2
Stability Stable
Maintained No

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Publication for BiMeta

BiMeta in publications

 (2)
PMCID: 5731601
PMID: 29244002
DOI: 10.1186/s12864-017-4273-6

[…] for binning metagenomic reads. metaprob is able to effectively group reads together to form bins of reads that represent candidate species. as several other binning tools like metacluster [] and bimeta [], metaprob is based on the construction of the reads overlap graph [] to mimic the assembly process. however, metaprob does not rely on a reference database and it cannot taxonomically […]

PMCID: 5374685
PMID: 28361710
DOI: 10.1186/s12859-017-1466-6

[…] of computational resources, by comparing our implementation (called bwtcluster) to a sampler of recent, state-of-the-art tools. specifically, we compare bwtcluster to metacluster [], mbbc [] and bimeta []. such comparisons are inherently unfair, for a number of reasons. first, metacluster is a highly engineered, parallel version of the read clustering pipeline, extensively tuned […]


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BiMeta institution(s)
Faculty of Computer Science and Engineering, HCMC University of Technology, Ho Chi Minh City, Vietnam; Institute of Applied Mechanics and Informatics, Vietnam Academy of Science and Technology (VAST), Ho Chi Minh City, Vietnam; Faculty of Information Technology, Lac Hong University, Dong Nai, Vietnam; Institute of Biotechnology, Vietnam Academy of Science and Technology (VAST), Ha Noi, Vietnam

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