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BiMeta specifications
Information
| Unique identifier | OMICS_12707 |
|---|---|
| Name | BiMeta |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | BiMeta supports both single-end and paired-end reads. |
| Operating system | Unix/Linux |
| Programming languages | C++ |
| Computer skills | Advanced |
| Version | 1.2 |
| Stability | Stable |
| Maintained | No |
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Publication for BiMeta
A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads.
BiMeta in publications
(2)[…] for binning metagenomic reads. metaprob is able to effectively group reads together to form bins of reads that represent candidate species. as several other binning tools like metacluster [] and bimeta [], metaprob is based on the construction of the reads overlap graph [] to mimic the assembly process. however, metaprob does not rely on a reference database and it cannot taxonomically […]
[…] of computational resources, by comparing our implementation (called bwtcluster) to a sampler of recent, state-of-the-art tools. specifically, we compare bwtcluster to metacluster [], mbbc [] and bimeta []. such comparisons are inherently unfair, for a number of reasons. first, metacluster is a highly engineered, parallel version of the read clustering pipeline, extensively tuned […]
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