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BindN-RF specifications


Unique identifier OMICS_08393
Name BindN-RF
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Stability No
Maintained No


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Publication for BindN-RF

BindN-RF citations


Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins

Nucleic Acids Res
PMCID: 3763535
PMID: 23788679
DOI: 10.1093/nar/gkt544

[…] owed an accuracy of 67% in T4 phage beta-glucosyltransferase (1M5R), whereas DNABindR performed well with an accuracy of 85%. The accuracy is 31% in centromere-binding protein using DP-Bind_PSSM, and BindN-RF could predict with the highest accuracy of 55%, which requires further improvement. These data demonstrated the necessity of selecting methods for efficient prediction and the requirement of […]


Misregulation of Scm3p/HJURP Causes Chromosome Instability in Saccharomyces cerevisiae and Human Cells

PLoS Genet
PMCID: 3183075
PMID: 21980305
DOI: 10.1371/journal.pgen.1002303

[…] rexpression of scm3 alleles that do not associate with CEN DNA should not affect chromosome segregation. To identify the putative DNA interacting domain of Scm3p, we used computational analysis using BindN-RF and MEME software. These analyses suggested that the first 100 amino acids of N-terminus of Scm3p exhibit properties of DNA binding sequences (); therefore, we constructed Scm3p variants wi […]


Computational systems biology: integration of sequence, structure, network, and dynamics

BMC Syst Biol
PMCID: 3121109
PMID: 21689468
DOI: 10.1186/1752-0509-5-S1-S1

[…] ent metaDBSite, a meta web server to predict DNA-binding residues for DNA-binding proteins. MetaDBSite integrates the prediction results from six available online web servers: DISIS, DNABindR, BindN, BindN-rf, DP-Bind, and DBS-PRED and it only uses sequence information of proteins.For protein-protein interaction, Morihiro Hayashida et al. proposed novel methods using conditional random fields for […]

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BindN-RF institution(s)
Department of Genetics and Biochemistry, Clemson University, Clemson, SC, USA

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