BindN-RF specifications

Information


Unique identifier OMICS_08393
Name BindN-RF
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Stability No
Maintained No

Maintainer


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Publication for BindN-RF

BindN-RF in publications

 (2)
PMCID: 3763535
PMID: 23788679
DOI: 10.1093/nar/gkt544

[…] methods for predicting the binding sites in dna-binding proteins from amino acid sequence, which have either online services or available standalone programs (). the methods are bindn (), bindn+ (), bindn-rf (), dbs-pred (), dbs-pssm (), dnabindr (), dp-bind with three categories, binary, blosum and pssm encoding (), metadbsite () and naps (). the details about the name, features, technique, […]

PMCID: 3183075
PMID: 21980305
DOI: 10.1371/journal.pgen.1002303

[…] of scm3 alleles that do not associate with cen dna should not affect chromosome segregation. to identify the putative dna interacting domain of scm3p, we used computational analysis using bindn-rf and meme software. these analyses suggested that the first 100 amino acids of n-terminus of scm3p exhibit properties of dna binding sequences (); therefore, we constructed scm3p variants […]


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BindN-RF institution(s)
Department of Genetics and Biochemistry, Clemson University, Clemson, SC, USA

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