16S ribosomal RNA sequencing data analysis bioinformatics software tools

16S rRNA-seq analysis steps

Marker sequencing amplifies and sequences conserved but variable genomic regions, usually hypervariable regions of the essential 16S rRNA gene. One then clusters these sequences, known as amplicons, into operational taxonomic units (OTUs). This approach can handle unknown and…

16S ribosomal RNA sequencing data analysis bioinformatics software tools

Most Recent Tools

Desktop app
G T A T C G C T A FunFrame FunFrame

FunFrame

Uses algorithms to de-noise functional gene pyrosequences and performs…

Uses algorithms to de-noise functional gene pyrosequences and performs ecological analysis on de-noised sequence data. FunFrame is an R-based data-analysis pipeline which provides users a unified set…

Desktop app
G T A T C G C T A PyroClean PyroClean

PyroClean

Denoises homopolymers from pyrosequence technologies. PyroClean has been…

Denoises homopolymers from pyrosequence technologies. PyroClean has been designed for protein-coding gene regions that are evolutionarily conserved with regard to amino acid composition and…

Desktop app
G T A T C G C T A Phoenix Phoenix

Phoenix

Processes large-scale datasets consisting of more than one hundred…

Processes large-scale datasets consisting of more than one hundred environmental samples and containing more than one million reads collectively. Phoenix 2 is a generic ribosomal RNA gene sequence…

Desktop app
G T A T C G C T A BLAST Read and… BLAST Read and Operational Taxonomic Unit…

BROCC BLAST Read and Operational Taxonomic Unit Consensus Classifier

Provides a well-characterized tool kit for sequence-based enumeration of…

Provides a well-characterized tool kit for sequence-based enumeration of eukaryotic organisms in human microbiome samples. BROCC is a pipeline for attributing sequences that was tailored for use with…

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