16S ribosomal RNA sequencing data analysis bioinformatics software tools

Marker sequencing amplifies and sequences conserved but variable genomic regions, usually hypervariable regions of the essential 16S rRNA gene. One then clusters these sequences, known as amplicons, into operational taxonomic units (OTUs). This approach can handle unknown and…

16S rRNA-seq analysis steps

16S ribosomal RNA sequencing data analysis bioinformatics software tools

Most Recent Tools

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Piphillin
Web

Piphillin

Predicts metagenomes with high accuracy by leveraging the most-current genome…

Predicts metagenomes with high accuracy by leveraging the most-current genome reference databases. Piphillin uses direct nearest-neighbor matching between 16S rRNA amplicons and genomes to predict…

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Themetagenomics
Desktop

Themetagenomics

Provides a topic model framework for microbiome abundance data, as well as…

Provides a topic model framework for microbiome abundance data, as well as prediction for 16S rRNA survey data. Themetagenomics is a package that offers an R implementation of PICRUSt and wraps…

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FUNGuild
Dataset

FUNGuild Fungi fUNctional Guild

Used to taxonomically parse fungal operational taxonomic units (OTUs) by…

Used to taxonomically parse fungal operational taxonomic units (OTUs) by ecological guild independent of sequencing platform or analysis pipeline. FUNGuild is a two-component tool consisting of a…

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DADA2
Desktop

DADA2 Divisive Amplicon Denoising Algorithm 2

Extends and improves the divisive amplicon denoising algorithm (DADA), a…

Extends and improves the divisive amplicon denoising algorithm (DADA), a model-based approach for correcting amplicon errors without constructing Operational Taxonomic Units (OTUs). DADA2 is an R…

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