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16S ribosomal RNA sequencing data analysis bioinformatics software tools

Marker sequencing amplifies and sequences conserved but variable genomic regions, usually hypervariable regions of the essential 16S rRNA gene. One then clusters these sequences, known as amplicons, into operational taxonomic units (OTUs). This approach can handle unknown and…

16S rRNA-seq analysis steps

Most recent bioinformatics tools

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HMB_Taxa…
Desktop

HMB_Taxa Pipeline

Builds predictive dynamic models of microbial communities. HMB_Taxa Pipeline is…

Builds predictive dynamic models of microbial communities. HMB_Taxa Pipeline is a systematic modeling and experimental application to dissect the microbial interactions shaping the assembly of a…

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UNCROSS
Algorithm

UNCROSS

Allows cross-talk detection in operational taxonomic unit (OTU) tables. UNCROSS…

Allows cross-talk detection in operational taxonomic unit (OTU) tables. UNCROSS utilizes a heuristic method to automate the manual procedure for annotating cross-talk. Indeed, this method permits…

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BAnOCC
Desktop

BAnOCC Bayesian Analysis of Compositional Covariance

Finds correlations in compositional data. BAnOCC quantifies uncertainty through…

Finds correlations in compositional data. BAnOCC quantifies uncertainty through the associated posterior and estimates both the log-basis correlation and precision matrix by modeling the composition…

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Prepare_taxa_ch…
Desktop

Prepare_taxa_charts.py

Assists users in generating publication ready taxonomic pie chart images from…

Assists users in generating publication ready taxonomic pie chart images from QIIME. Prepare_taxa_charts.py is a program that helps in: (i) mapping sample name and the corresponding pie chart images…

Most popular analytical software

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RDP
Web

RDP Ribosomal Database Project

Provides aligned and annotated ribosomal RNA (rRNA) gene sequence data, along…

Provides aligned and annotated ribosomal RNA (rRNA) gene sequence data, along with tools to allow researchers to analyse their own rRNA gene sequences. RDP offers tools for browsing and searching the…

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Vikodak
Web

Vikodak

A multi-modular package that is based on the above assumption and automates…

A multi-modular package that is based on the above assumption and automates inferring and/ or comparing the functional characteristics of an environment using taxonomic abundance generated from one…

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