16S ribosomal RNA sequencing data analysis bioinformatics software tools

16S rRNA-seq analysis steps

Marker sequencing amplifies and sequences conserved but variable genomic regions, usually hypervariable regions of the essential 16S rRNA gene. One then clusters these sequences, known as amplicons, into operational taxonomic units (OTUs). This approach can handle unknown and…

16S ribosomal RNA sequencing data analysis bioinformatics software tools

Most Recent Tools

G T A T C G C T A
AmosCmp16Spipel…
Desktop

AmosCmp16Spipeline

Uses the AMOScmp software to assemble multiple, potentially overlapping 16S…

Uses the AMOScmp software to assemble multiple, potentially overlapping 16S rRNA sequencing reads based on read mappings to a reference 16S rRNA gene. AmosCmp16Spipeline is a sequence assembly. An…

G T A T C G C T A
WigeoN
Desktop

WigeoN

Examines the sequence conservation between a query and a trusted reference…

Examines the sequence conservation between a query and a trusted reference sequence, both in NAST alignment format. WigeoN is a flexible command-line based reimplementation of the Pintail algorithm.…

G T A T C G C T A
Otupipe
Desktop

Otupipe

Creates operational taxonomic units (OTUs) from next-generation sequence reads…

Creates operational taxonomic units (OTUs) from next-generation sequence reads for single-region experiments such as 16S and ITS. Otupipe is a bash script. It requires two arguments: an input file in…

G T A T C G C T A
microPITA
Desktop

microPITA microbiomes: Picking Interesting Taxonomic Abundance

Picks interesting taxonomic abundance. microPITA is a computational tool…

Picks interesting taxonomic abundance. microPITA is a computational tool enabling sample selection in two-stage (tiered) studies. Using two-stage designs can more efficiently allocate resources,…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.