16S ribosomal RNA sequencing data analysis bioinformatics software tools

Marker sequencing amplifies and sequences conserved but variable genomic regions, usually hypervariable regions of the essential 16S rRNA gene. One then clusters these sequences, known as amplicons, into operational taxonomic units (OTUs). This approach can handle unknown and…

16S rRNA-seq analysis steps

Most recent bioinformatics tools

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GPMicrobiome
Desktop

GPMicrobiome

Models bacterial compositions derived from 16S rRNA sequencing. GPMicrobiome is…

Models bacterial compositions derived from 16S rRNA sequencing. GPMicrobiome is a Stan implementation of the Temporal Gaussian Process Model for Compositional Data Analysis (TGP-CODA). The model…

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TAXAassign
Desktop

TAXAassign

Attributes taxonomic assignments to nucleotide sequences at different levels by…

Attributes taxonomic assignments to nucleotide sequences at different levels by using NCBI's Taxonomy. TAXAassign also provides taxa abundances for a given set of sequences which can be gathered…

ParsInsert
Desktop

ParsInsert

Proposes a Parsimonious Insertion’ algorithm implementation. ParsInsert…

Proposes a Parsimonious Insertion’ algorithm implementation. ParsInsert allows users to explore information derived from publicly available curated phylogenetic trees with the aims of add new…

GramDist
Desktop

GramDist

Allows users to work about clustering large data sets of 16S rDNA sequences…

Allows users to work about clustering large data sets of 16S rDNA sequences based on the inherent grammar of DNA and RNA sequences. GramDist utilizes a grammar-based distance metric to identify…

Most popular analytical software

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Vikodak
Web

Vikodak

A multi-modular package that is based on the above assumption and automates…

A multi-modular package that is based on the above assumption and automates inferring and/ or comparing the functional characteristics of an environment using taxonomic abundance generated from one…

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