16S ribosomal RNA sequencing data analysis bioinformatics software tools

Marker sequencing amplifies and sequences conserved but variable genomic regions, usually hypervariable regions of the essential 16S rRNA gene. One then clusters these sequences, known as amplicons, into operational taxonomic units (OTUs). This approach can handle unknown and…

16S rRNA-seq analysis steps

Most recent bioinformatics tools

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EMDUnifrac
Desktop

EMDUnifrac Earth Movers Distance Unifrac

Computes the Unifrac distance and also returns the differentially abundant…

Computes the Unifrac distance and also returns the differentially abundant operational taxonomic units (OTUs) that contributed to this distance. EMDUnifrac is based on a linear time algorithm. It can…

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Fast Unifrac
Web

Fast Unifrac

Allows analysis of large phylogenetic datasets. Fast Unifrac facilitates rapid…

Allows analysis of large phylogenetic datasets. Fast Unifrac facilitates rapid identification of patterns in large and complex datasets. It permits to expand insight into a wide range of microbial…

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SigTree
Desktop

SigTree

Provides a solution to use results of operational taxonomic unit (OTU)-level…

Provides a solution to use results of operational taxonomic unit (OTU)-level significance tests to identify and visualize branches in a phylogenetic tree. SigTree permits to convert the one-sided…

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EstS
Desktop

EstS EstimateS

Combines biodiversity statistics, estimators, and indices based on biotic…

Combines biodiversity statistics, estimators, and indices based on biotic sampling data. EstS is able to compute (1) expected species accumulation curves for rarefied reference samples, (2) expected…

Most popular analytical software

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Vikodak
Web

Vikodak

A multi-modular package that is based on the above assumption and automates…

A multi-modular package that is based on the above assumption and automates inferring and/ or comparing the functional characteristics of an environment using taxonomic abundance generated from one…

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