Binning_refiner specifications

Unique identifier:
OMICS_16096
Interface:
Command line interface
Input data:
Two or three binning programs produced bin sets.
Output data:
All refined bins larger than defined size cutoff and their qualities, the refined contamination-free bins, the refined good-quality bins, the cross-link (shared sequences) between input bins, the statistics of input and refined bins.
Programming languages:
Python
Computer skills:
Advanced
Requirements:
R, GoogleVis, rpy2, Numpy, Matplotlib, BioPython, CheckM
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux
License:
GNU Affero General Public License version 3
Stability:
Stable
Maintained:
Yes

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Binning_refiner distribution

download

Binning_refiner support

Documentation

Maintainer

  • Torsten Thomas <>

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Publications

Institution(s)

School of Biotechnology and Biomolecular Sciences, University of New South Wales, Australia; Centre for Marine Bio-Innovation, University of New South Wales, Australia

Funding source(s)

This work was funded by the Australian Research Council and by the China Scholarship Council (201508200019).

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