Binning_refiner specifications

Information


Unique identifier OMICS_16096
Name Binning_refiner
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Two or three binning programs produced bin sets.
Input format FASTA
Output data All refined bins larger than defined size cutoff and their qualities, the refined contamination-free bins, the refined good-quality bins, the cross-link (shared sequences) between input bins, the statistics of input and refined bins.
Operating system Unix/Linux
Programming languages Python
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
Requirements
R, GoogleVis, rpy2, Numpy, Matplotlib, BioPython, CheckM
Maintained Yes

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Maintainer


  • person_outline Torsten Thomas <>

Publication for Binning_refiner

Binning_refiner institution(s)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Australia; Centre for Marine Bio-Innovation, University of New South Wales, Australia
Binning_refiner funding source(s)
This work was funded by the Australian Research Council and by the China Scholarship Council (201508200019).

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