Main logo
?

Binning shotgun reads (metagenomic analysis)

Taxonomic classification of reads, which is called binning, is the most basic step in the characterization of microbial communities by metagenome sequencing. However, taxonomic binning of metagenome shotgun sequences is a challenging task for researchers, especially when working…

Binning shotgun reads steps

Most recent bioinformatics tools

G T A T C G C T A
SHERA
Desktop

SHERA SHortread Error-Reducing Aligner

Aligns each mate-pair to produce a composite read with Phred-like quality…

Aligns each mate-pair to produce a composite read with Phred-like quality scores. SHERA recalculates the error probability of each bp, given the base call data from both reads for nucleotides in the…

G T A T C G C T A
ICTV
Dataset

ICTV International Committee on Taxonomy of Viruses

Provides access to taxonomy database of virus. ICTV permits the access of an…

Provides access to taxonomy database of virus. ICTV permits the access of an online resource that offers an extensive collection of information supporting its overall activities, including the ICTV…

G T A T C G C T A
lattice-metage
Desktop

lattice-metage

Allows clustering of metagenomic datasets. lattice-metage is a two-dimensional…

Allows clustering of metagenomic datasets. lattice-metage is a two-dimensional lattice model that can incorporate information from multiple models. The software backs-off to a combination of multiple…

G T A T C G C T A
sourmash
Desktop

sourmash

Allows users to create, compare, and manipulate MinHash sketches of genomic…

Allows users to create, compare, and manipulate MinHash sketches of genomic data. sourmash consists in a library for MinHash sketches, which enables identification of samples and data sets with…

Most popular analytical software

G T A T C G C T A
MEGAN
Desktop

MEGAN MEtaGenome ANalyzer

Allows to interactively explore and analyze, both taxonomically and…

Allows to interactively explore and analyze, both taxonomically and functionally, large-scale microbiome sequencing data. MEGAN is a comprehensive microbiome analysis toolbox for metagenome,…

G T A T C G C T A
Kraken
Desktop

Kraken

A system for assigning taxonomic labels to short DNA sequences, usually…

A system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.

G T A T C G C T A
CLARK
Desktop

CLARK CLAssifier based on Reduced K-mers

An approach to classify metagenomic reads at the species or genus level with…

An approach to classify metagenomic reads at the species or genus level with high accuracy and high speed. Extensive experimental results on various metagenomic samples show that the classification…

Related Websites
Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.