BINOCh specifications

Information


Unique identifier OMICS_00500
Name BINOCh
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 1.0.0
Stability Stable
Requirements
Numpy
Maintained Yes

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Documentation


Publication for BINOCh

BINOCh citation

library_books

NF E2, FLI1 and RUNX1 collaborate at areas of dynamic chromatin to activate transcription in mature mouse megakaryocytes

2016
Sci Rep
PMCID: 4960521
PMID: 27457419
DOI: 10.1038/srep30255

[…] rameters from the merged ChIP-seq library. H3K4me2-marked nucleosome pairs, NSD scores during MK maturation, and sequence motifs enriched among the most dynamic nucleosome pairs were identified using BINOCh with default parameters. NF-E2, FLI1, and RUNX1 binding sites in the genome were identified using MACS 1.4 with default parameters. Motifs enriched at TF binding sites were identified using Seq […]

BINOCh institution(s)
Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA, USA; Department of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA
BINOCh funding source(s)
This project was funded by the National Institutes of Health (R01 HG4069).

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