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Associated diseases

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BINOCh specifications

Information


Unique identifier OMICS_00500
Name BINOCh
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 1.0.0
Stability Stable
Requirements
Numpy
Maintained Yes

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Publication for BINOCh

BINOCh in publication

PMCID: 4960521
PMID: 27457419
DOI: 10.1038/srep30255

[…] from the merged chip-seq library. h3k4me2-marked nucleosome pairs, nsd scores during mk maturation, and sequence motifs enriched among the most dynamic nucleosome pairs were identified using binoch with default parameters. nf-e2, fli1, and runx1 binding sites in the genome were identified using macs 1.4 with default parameters. motifs enriched at tf binding sites were identified using […]


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BINOCh institution(s)
Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA, USA; Department of Medical Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA
BINOCh funding source(s)
This project was funded by the National Institutes of Health (R01 HG4069).

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