BinQuasi specifications

Information


Unique identifier OMICS_28398
Name BinQuasi
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some sorted and indexed BAM files.
Input format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 0.1-6
Stability Stable
Requirements
BiocGenerics, IRanges, GenomicRanges, Rsamtools, pracma, S4Vectors, GenomicAlignments, SummarizedExperiment, edgeR, rmarkdown, knitr, nleqslv, quadprog, mgcv, RMySQL, csaw(≥1.12.0)
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainers


  • person_outline Peng Liu
  • person_outline Emily Goren

Additional information


https://github.com/emilygoren/BinQuasi

Publication for BinQuasi

BinQuasi institution(s)
Department of Statistics, Iowa State University, Ames, IA, USA; Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, USA; Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA
BinQuasi funding source(s)
Supported by the National Science Foundation Plant Genome Research Program, Award Number IOS-1127017, and the Office of Science (BER), U.S. Department of Energy, Grant Number DESC0014395.

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