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BIO_CLOCK specifications


Unique identifier OMICS_13388
Interface Web user interface
Restrictions to use None
Programming languages Python, R
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Forest Agostinelli <>

Publication for BIO_CLOCK

BIO_CLOCK in publications

PMCID: 5318160
PMID: 28218891
DOI: 10.7554/eLife.20214.035

[…] metabolite data. does plsr work with metabolite data as well?, 8) from and , plsr under-estimates melatonin phase (negative error value). is this correct?, 9) the agostinelli et al. paper is cited. bio_clock should be added to the algorithms benchmarked here., 10) this model improves upon previous models, but what advantage does this improved model have over previous models? or, what advantage […]

PMCID: 4498749
PMID: 26162069
DOI: 10.1371/journal.pone.0132621

[…] time with changing seasons. to explain how photoperiodic organisms perceive day-length signals, the external coincidence model has been proposed []. photoreceptors, circadian clock components, bio-clock and light regulated genes are key components for day-length detection in the external coincidence model. among the clock- and light-regulated genes, co has been identified as a key gene […]

PMCID: 3948625
PMID: 24613963
DOI: 10.1371/journal.pone.0090435

[…] from diapause eggs of the silkworm bombyx mori (b.mori) show that the protein is a time-dependent atpase that may regulate the diapause duration of b.mori eggs . time-ea4, which also named diapause bio-clock protein or time, had been identified as an esterase, acting as a single, transitory activation burst for the termination of the b.mori diapause two weeks after eggs had been chilled at 5°c […]

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BIO_CLOCK institution(s)
Department of Computer Science, University of California-Irvine, Irvine, CA, USA; Department of Statistics, University of California-Irvine, Irvine, CA, USA; Department of Biological Chemistry, University of California-Irvine, Irvine, CA, USA
BIO_CLOCK funding source(s)
This work was supported by grants from the National Science Foundation (NSF IIS-1550705) and the National Institutes of Health (NIH DA 036984).

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