BIO-3D statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BIO-3D
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BIO-3D specifications

Information


Unique identifier OMICS_12577
Name BIO-3D
Alternative names BIO-3D, Bio3D-web
Interface Web user interface
Restrictions to use None
Input data A protein structure or sequence.
Input format PDB
Programming languages R
License GNU General Public License version 2.0
Computer skills Basic
Version 2.3
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Barry J. Grant

Additional information


http://thegrantlab.org/bio3d/html/index.html The package can also be downloaded from https://cran.r-project.org/package=bio3d

Information


Unique identifier OMICS_12577
Name BIO-3D
Alternative names BIO-3D, Bio3D-web
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input format FASTA,PDB,NCDF,DCD,PQR,MOL2,CIF
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.3.4
Stability Stable
Source code URL http://thegrantlab.org/bio3d/download/download-bucket?download=24:bio3d-v2-3-0-source
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Barry J. Grant

Additional information


http://thegrantlab.org/bio3d/html/index.html The package can also be downloaded from https://cran.r-project.org/package=bio3d

Publications for BIO-3D

BIO-3D citation

library_books

Investigating Protein Sequence structure dynamics Relationships with Bio3D web

2017
PMCID: 5612356
PMID: 28745621
DOI: 10.3791/55640

[…] hich presents pre-computed analysis of PDB structures sharing 95% or higher sequence identity. However, analysis of more diverse structure sets is not currently available.We have previously presented Bio3D-web – an easy to use web application for the analysis of protein sequence-structure-dynamic relationships. Bio3D-web is unique in providing easy to use integrated functionality for the identific […]


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BIO-3D institution(s)
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Department of Chemistry, Georgia State University, Atlanta, GA, USA; Division of Biological Sciences, Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA
BIO-3D funding source(s)
Supported by the University of Michigan, National Institutes of Health (GM070862) and the University of Bergen.

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