Biological pathway analysis software tools and databases

Pathway analysis applications

Biological pathway analysis software tools and databases

Most Recent Tools

DiffNet
Desktop

DiffNet

Provides an implementation of statistically significant differential…

Provides an implementation of statistically significant differential sub-network analysis for paired biological networks. DiffNet performs differential network analysis for paired biological networks…

DINA
Web

DINA DIfferential Network Analysis

Quantifies the variability in the co-regulation probability of genes across…

Quantifies the variability in the co-regulation probability of genes across tissues or conditions. DINA is an approach based on detecting differences in the number of edges among genes in a pathway…

Joint density…
Desktop
MARIO
Desktop

MARIO MArkov Random fields to Integrate Omics variables

Classifies genes as differential or not differential based on a generalized…

Classifies genes as differential or not differential based on a generalized correlation measure for multiple sequencing-based genomic variables. MARIO is a hierarchical Bayesian model approach for…

Most Popular Tools

CMGRN
Web

CMGRN Constructing Multilevel Gene Regulatory Networks

An integrative web server to unravel hierarchical interactive networks at…

An integrative web server to unravel hierarchical interactive networks at different regulatory levels. The developed method used the Bayesian network modeling to infer causal interrelationships among…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

BiGG Models
Dataset

BiGG Models

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG…

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG Models contains more than 75 high-quality, manually-curated genome-scale metabolic models. On the website, users can…

NCG
Dataset

NCG Network of Cancer Genes

A manually curated repository of cancer genes derived from the scientific…

A manually curated repository of cancer genes derived from the scientific literature. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational…

Curators for Pathway analysis

  • Gary Bader's avatar image
    Gary Bader
    Department of Computer Science,…
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