Biological pathway analysis software tools and databases

Pathway analysis applications

Biological pathway analysis software tools and databases

Most Recent Tools

Desktop app
LNA_GNA LNA_GNA

http://www3.nd.edu/~cone/LNA_GNA/ LNA_GNA

Evaluates local network alignment (LNA) against global network alignment (GNA).…

Evaluates local network alignment (LNA) against global network alignment (GNA). LNA_GNA method provides guidelines for researchers to properly demonstrate the superiority of a newly proposed network…

Desktop app
multiMAGNA++ multiMAGNA++

multiMAGNA++

Maximizes an alignment quality measure by evolving a population of alignments…

Maximizes an alignment quality measure by evolving a population of alignments over time. multiMAGNA++ can be used for biological network alignment, i.e., to align molecular networks of different…

Web app
Simple Automatic… Simple Automatic Network Aligner

SANA Simple Automatic Network Aligner

Provides a web interface for network alignments. SANA is a search algorithm…

Provides a web interface for network alignments. SANA is a search algorithm based on Simulated Annealing, a metaheuristic local search algorithm with a rich history of successful applications to many…

Desktop app
Network Alignment… Network Alignment with BEE Colony Optimization

NABEECO Network Alignment with BEE Colony Optimization

Utilizes the artificial bee colony computing strategies for solving the…

Utilizes the artificial bee colony computing strategies for solving the so-called Graph Edit Distance (GED) problem. NABEECO is a tool for protein-protein interaction (PPI) network alignment. It is a…

Most Popular Tools

Web app
Constructing… Constructing Multilevel Gene Regulatory Networks

CMGRN Constructing Multilevel Gene Regulatory Networks

An integrative web server to unravel hierarchical interactive networks at…

An integrative web server to unravel hierarchical interactive networks at different regulatory levels. The developed method used the Bayesian network modeling to infer causal interrelationships among…

BiGG Models BiGG Models

BiGG Models

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG…

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG Models contains more than 75 high-quality, manually-curated genome-scale metabolic models. On the website, users can…

Network of Cancer… Network of Cancer Genes

NCG Network of Cancer Genes

A manually curated repository of cancer genes derived from the scientific…

A manually curated repository of cancer genes derived from the scientific literature. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational…

Desktop app
Network Alignment Network Alignment

NETAL Network Alignment

An algorithm for the global alignment of protein-protein interaction networks.…

An algorithm for the global alignment of protein-protein interaction networks. NETAL uses a greedy method, based on the alignment scoring matrix, which is derived from both biological and topological…

Curators for Pathway analysis

  • Gary Bader's avatar image
    Gary Bader
    Department of Computer Science,…
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