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Systems and Synthetic biology software tools and databases

Systems biology is an inter-disciplinary science that studies the complex interactions and the collective behavior of a cell or an organism. Synthetic biology, as a technological subject, combines biological science and engineering, allowing the…

Systems & Synthetic biology applications

Experts in Systems & Synthetic biology

They share and annotate bioinformatics tools

  • Gary Bader's avatar image
    Gary Bader
    Department of Computer Science, University of Toronto, Toronto, Ontario, Canada

Most recent bioinformatics tools

COMICS
Web

COMICS

Allows combined integration and visualization of molecular expression data in…

Allows combined integration and visualization of molecular expression data in some vertebrate model organisms. COMICS employs pre-existing anatomical ontologies to map arbitrary omics data across…

HOPACH
Desktop

HOPACH Hierarchical Ordered Partitioning And Collapsing Hybrid

Addresses some of the short comings of currently available methods for…

Addresses some of the short comings of currently available methods for clustering gene expression data. HOPACH constructs a hierarchical tree whose final level is an ordered list of elements. It…

Dynamic Tree…
Desktop

Dynamic Tree Cut

Recognizes branches that could not have been identified using the static cut…

Recognizes branches that could not have been identified using the static cut method. Dynamic Tree Cut is based on analyzing the shape of the branches of a dendrogram. It relies solely on the…

TACO
Web

TACO TAble COmparison

Facilitates effective visual comparison of potentially large tabular datasets…

Facilitates effective visual comparison of potentially large tabular datasets over time. TACO is a visual comparison tool that calculates the difference between pairs of tabular data. Based on that,…

Most popular analytical software and databases

CMGRN
Web

CMGRN Constructing Multilevel Gene Regulatory Networks

An integrative web server to unravel hierarchical interactive networks at…

An integrative web server to unravel hierarchical interactive networks at different regulatory levels. The developed method used the Bayesian network modeling to infer causal interrelationships among…

GPS-Prot
Web

GPS-Prot

A software tool that allows users to easily create an integrated human protein…

A software tool that allows users to easily create an integrated human protein network, or HIV-host networks. A major advantage of this platform compared to other visualization tools is its web-based…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

G T A T C G C T A
Geneious
Desktop

Geneious

Proposes a powerful and comprehensive suite of next generation sequencing (NGS)…

Proposes a powerful and comprehensive suite of next generation sequencing (NGS) analysis tools. Through an intuitive and user-friendly interface, Geneious provides visual sequence alignment and…

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