Systems and Synthetic biology software tools and databases

Systems biology is an inter-disciplinary science that studies the complex interactions and the collective behavior of a cell or an organism. Synthetic biology, as a technological subject, combines biological science and engineering, allowing the…

Systems & Synthetic biology applications

Most recent bioinformatics tools

RnR
Dataset

RnR Regulatory-network Research

Provides access to over-expression experiments in Arabidopsis T87 cultured…

Provides access to over-expression experiments in Arabidopsis T87 cultured cells. RnR is a database allowing users to submit a gene or metabolite to study regulatory relationship between gene and…

SNAPPI-DB
Dataset
Automated…
Desktop

Automated design of genomic Southern blot probes

Automatically identifies a probe sequence that is unique within the genome for…

Automatically identifies a probe sequence that is unique within the genome for gene or locus of interest. Southern blot is applicable to region of a genome which contains little or no repetitive DNA…

KEGG Reaction…
Dataset

KEGG Reaction Module

Provides type of module defined from purely chemical data without incorporating…

Provides type of module defined from purely chemical data without incorporating any enzyme data. KEGG Reaction Module offers sequence of chemical structure transformation patterns defined by a set of…

Most popular analytical software and databases

CMGRN
Web

CMGRN Constructing Multilevel Gene Regulatory Networks

An integrative web server to unravel hierarchical interactive networks at…

An integrative web server to unravel hierarchical interactive networks at different regulatory levels. The developed method used the Bayesian network modeling to infer causal interrelationships among…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

BiGG Models
Dataset

BiGG Models

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG…

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG Models contains more than 75 high-quality, manually-curated genome-scale metabolic models. On the website, users can…

NCG
Dataset

NCG Network of Cancer Genes

A manually curated repository of cancer genes derived from the scientific…

A manually curated repository of cancer genes derived from the scientific literature. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational…

Curators for Systems & Synthetic biology

  • Gary Bader's avatar image
    Gary Bader
    Department of Computer Science,…
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