Bioclojure statistics

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Bioclojure specifications

Information


Unique identifier OMICS_12624
Name Bioclojure
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input format FASTA,FASTQ,XML
Operating system Unix/Linux
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 0.5.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jason Mulven <>

Publication for Bioclojure

Bioclojure in publications

 (2)
PMCID: 5952920
PMID: 28040748
DOI: 10.1093/bib/bbw130

[…] making its debut in bioinformatics and computational biology research [, , ]. most recently, clojure was used to parallelize the processing and analysis of sam/bam files []. furthermore, the bioclojure project provides seeds for the bioinformatics community that can be used as building blocks for writing lfl applications. as of now, bioclojure consists of parsers for various kinds […]

PMCID: 4848821
PMID: 27127540
DOI: 10.1186/s13040-016-0095-3

[…] function) for languages like c++ or java are in short supply. software packages and libraries specifically designed for ngs such as bamtools [], htslib (samtools/bcftools) [], ngs++ [], bioclojure [], or libstatgen [] are focused on parsing and file format standardization, with limited provision of data structures and algorithms useful for ngs analytics. although a number […]


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Bioclojure institution(s)
Department of Microbiology, Immunology and Tropical Medicine, George Washington University, Washington DC, USA; Research Center for Neglected Diseases of Poverty, School of Medicine and Health Sciences, George Washington University, Washington DC, USA; QIMR Berghofer Medical Research Institute, Infectious Disease and Cancer, Brisbane, QLD, Australia; The University of Queensland, School of Biomedical Sciences, Brisbane, QLD, Australia
Bioclojure funding source(s)
Supported by National Health and Medical Research Council, Australia (grant number 1051627); and an award R01CA155297 from the National Cancer Institute.

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