BioCocoa statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BioCocoa

Tool usage distribution map

This map represents all the scientific publications referring to BioCocoa per scientific context
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Associated diseases


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BioCocoa specifications


Unique identifier OMICS_19790
Name BioCocoa
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Objective-C
Computer skills Advanced
Version 2.2.2
Stability Stable
Source code URL
Maintained Yes


No version available


Additional information

BioCocoa citations


A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata

BMC Bioinformatics
PMCID: 5028923
PMID: 27645252
DOI: 10.1186/s12859-016-1257-5

[…] this method with 8-bp words to identify and analyze UCEs of at least 100 bp in plants and to expand the UCE sets in vertebrates.Christley et al. [] offered a public domain software embedded into the BioCocoa library. It is based on a combinatorial algorithm that considers pairs of genomes using suffix arrays, after which the intersection is taken for all pairs; no alignments are involved. The met […]


Multiple organism algorithm for finding ultraconserved elements

BMC Bioinformatics
PMCID: 2244594
PMID: 18186941
DOI: 10.1186/1471-2105-9-15

[…] We have provided our algorithm in the BioCocoa library which is the de facto Objective-C bioinformatics framework instead of starting a new software package. The main functionality is provided in two Objective-C classes, BCSuffixArray and […]

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BioCocoa reviews

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