BioCyc statistics
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BioCyc specifications
Information
| Unique identifier | OMICS_02675 |
|---|---|
| Name | BioCyc |
| Restrictions to use | Academic or non-commercial use |
| Community driven | No |
| Data access | File download, Browse |
| User data submission | Not allowed |
| Maintained | Yes |
| Wikipedia | https://en.wikipedia.org/wiki/BioCyc_database_collection |
Subtool
- SmartTables
Documentation
Maintainer
- person_outline Peter D Karp
Additional information
Publication for BioCyc
BioCyc citations
(136)SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases
[…] atabase for the computational prediction of species-specific databases for organisms with annotated genomes (). To date, about 9400 such derivative PGDBs have been generated and made available in the BioCyc database collection (http://biocyc.org/), but very few have been curated in a way that would corroborate the predicted metabolic network and integrate experimental information from the publishe […]
Identification of a highly active tannase enzyme from the oral pathogen Fusobacterium nucleatum subsp. polymorphum
[…] l bacteria genera using NCBI blastx. Among the hits, a gene from Fusobacterium nucleatum subsp. polymorphum (annotated as a hypothetical protein) showed 44% identity to TanBLp (GMHT-1603-MONOMER from BioCyc database) []. Because of the identity, we annotated the gene as tanBFnp and the protein that it encodes as TanBFnp. In addition, the CDD web tool revealed that TanBFnp presented domains conserv […]
Functional Genomics and Phylogenetic Evidence Suggest Genus Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium
[…] c cobalamin biosynthesis pathway (Helliwell et al., ), these data suggest that B12 biosynthesis and thus overall environmental bioavailability could be influenced by limiting iron. Interestingly, the BioCyc database (https://biocyc.org) implicates another gene, Tery_4461, as the cobalt reductase while the KEGG database (http://www.genome.jp/kegg/pathway.html) implicates isiB (Tery_1666) as above. […]
FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets
[…] others [–].Around the world, many databases containing molecular genetic networks describing metabolic processes, diseases, phenotypic traits, etc. have been developed – for example, KEGG PATHWAY [], BioCyc [], BioGRID [] and IntAct [].There are systems that allow the reconstruction of gene networks for a given set of genes/proteins including FunCoup [], STRING [], Pathway Studio [], Ingenuity Pat […]
A comprehensive transcriptome analysis of skeletal muscles in two Polish pig breeds differing in fat and meat quality traits
[…] ysis of DEGs was performed by Panther Gene List software, where the P-value was estimated in overrepresentation tests and Kobas 3.0, which predicts biological pathways based on the KEGG, Reactome and Biocyc databases. […]
Structure based drug discovery for designing leads for the non toxic metabolic targets in multi drug resistant Mycobacterium tuberculosis
[…] for their series of biochemical steps. Literature mining was used as a key source to elucidate their metabolic interference and the collected data was verified through the pathways available in KEGG, BioCyc and MetaCyc. Of these 33 targets, 15 with available crystal structures were utilized for the Molecular Docking studies. The GLIDE suite of Schrodinger for the corresponding natural substrate (N […]
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