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Biodegradation databases/repositories | Metabolomics

The cleanup of pollutants from soil and water is becoming an important task as human activities produce large amounts of chemical compounds (up to tens of millions) that are frequently released into the environment. Microbial populations play an…
enviPath
Dataset

enviPath

A database and prediction system for the microbial biotransformation of organic…

A database and prediction system for the microbial biotransformation of organic environmental contaminants. enviPath provides the possibility to store and view experimentally observed…

MetaRouter
Dataset

MetaRouter

Maintains heterogeneous information related to bioremediation and…

Maintains heterogeneous information related to bioremediation and biodegradation. MetaRouter is a relational database where the information on chemical compounds, reactions, enzymes and organisms is…

Bionemo
Dataset

Bionemo

Stores manually curated information about proteins and genes directly…

Stores manually curated information about proteins and genes directly implicated in the Biodegradation metabolism. When possible, Bionemo includes information on sequence, domains and structures for…

BioSurfDB
Dataset

BioSurfDB Biosurfactants and Biodegradation Database

A curated relational information system integrating data from: (i) metagenomes;…

A curated relational information system integrating data from: (i) metagenomes; (ii) organisms; (iii) biodegradation relevant genes; proteins and their metabolic pathways; (iv) bioremediation…

AromaDeg
Dataset

AromaDeg

A web-based resource targeting aerobic degradation of aromatics and manually…

A web-based resource targeting aerobic degradation of aromatics and manually curated databases constructed based on a phylogenomic approach. Grounded in phylogenetic analyses of protein sequences of…

OxDBase
Dataset

OxDBase

Provides a compilation of the oxygenase data as sourced from primary literature…

Provides a compilation of the oxygenase data as sourced from primary literature in the form of web accessible database. There are two separate search engines for searching into the database i.e. mono…

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