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Biodiversity collection databases | Comparative genomics

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and…
Fauna Europaea
Dataset

Fauna Europaea

Provides a web-based information infrastructure with an index of scientific…

Provides a web-based information infrastructure with an index of scientific names animals. Fauna Europaea identifies and catalogues the components of European biodiversity into a single database to…

GGBN
Dataset

GGBN Global Genome Biodiversity Network

Permits the use of samples and data by providing standardized access to…

Permits the use of samples and data by providing standardized access to genome-quality samples and related data. The GGBN Data Portal (i) allows a quick assessment of whether adequate samples are…

BacDive
Dataset

BacDive Bacterial Diversity Metadatabase

Provides strain-linked information about bacterial and archaeal biodiversity.…

Provides strain-linked information about bacterial and archaeal biodiversity. The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well…

B-HIT
Desktop

B-HIT B-Harvesting and Indexing Toolkit

Helps primary information providers to improve their data. B-HIT can harvest…

Helps primary information providers to improve their data. B-HIT can harvest and index records having not only botanical, zoological and bacterial names, but also scientific names of minerals. It…

AnnoSys
Web

AnnoSys

Offers a user interface that automatically generates annotations in a…

Offers a user interface that automatically generates annotations in a standardised format. AnnoSys provides generalised annotation body structures and generalised robust fragment selection mechanisms…

TriatoKey
Mobile
Web

TriatoKey

Helps healthcare technicians to overcome the difficulties to identify…

Helps healthcare technicians to overcome the difficulties to identify triatomine vectors when the technical expertise is missing. TriatoKey offers a web app and a mobile app that employs a series of…

SeriPort
Dataset

SeriPort

Provides a common platform for all kinds of data available on sericulture in…

Provides a common platform for all kinds of data available on sericulture in the internet. SeriPort is a user-friendly and dynamic web portal to accommodate available databases as well as…

BeeDeeM
Desktop

BeeDeeM Bioinformatics Databank Manager Software

Provides a suite of command-line and UI softwares to install and use major…

Provides a suite of command-line and UI softwares to install and use major sequence databanks and biological classifications. BeeDeeM is a general purpose Bioinformatics Databank Manager. It…

speciesLink
Dataset

speciesLink

Provides primary data from biological collections. speciesLink is a distributed…

Provides primary data from biological collections. speciesLink is a distributed information system that integrates specie and specimen data available in natural history museums, herbaria and culture…

GBIF.DE Algae…
Dataset

GBIF.DE Algae & Protozoa

Includes all organisms commonly known as protists, classified within the groups…

Includes all organisms commonly known as protists, classified within the groups “algae” and “protozoa”. GBIF.DE presents a slice of data from the Global Biodiversity Information Facility…

World Flora…
Dataset

World Flora Online

Describes, classifies and names plants. The World Flora Online is an…

Describes, classifies and names plants. The World Flora Online is an international network of data providers, in which many herbaria provide information about specimen holdings. This online resource…

JACQ
Dataset

JACQ

Provides a collection of dried plant specimens data. JACQ is a database that…

Provides a collection of dried plant specimens data. JACQ is a database that enables international users to have quick access to botanical and herbaria collections. The goal of this online resource…

GBIF
Dataset

GBIF Global Biodiversity Information Facility

Allows user to access data about any types of organism. GBIF is an…

Allows user to access data about any types of organism. GBIF is an international open data infrastructure. It operates with a network of nodes and coordinates the biodiversity information facilities…

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