Biodoop statistics

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Associated diseases

Associated diseases

Biodoop specifications


Unique identifier OMICS_01224
Name Biodoop
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
Computer skills Advanced
Version 0.2.0
Stability Stable
NumPy, SciPy, Protocol Buffers, Pydoop
High performance computing Yes
Maintained Yes



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Biodoop in publication

PMCID: 3040523
PMID: 21210976
DOI: 10.1186/1471-2105-11-S12-S1

[…] to build an executable mapper for blast. gsea was implemented using rewritten functions in python and used with hadoop streaming for the mapreduce version. they are now working on development of biodoop [], a suite of parallel bioinformatics applications based upon hadoop, said suite consisting of three qualitatively different algorithms: blast, gsea and grammar. they deem their results […]

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