BioEdit statistics

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Citations per year

Number of citations per year for the bioinformatics software tool BioEdit
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Tool usage distribution map

This map represents all the scientific publications referring to BioEdit per scientific context
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Popular tool citations

chevron_left Multiple nucleotide sequence alignment Multiple amino acid sequence alignment Nucleotide sequence homology search chevron_right
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Protocols

BioEdit specifications

Information


Unique identifier OMICS_27634
Name BioEdit
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format RTF,FASTA,FST,FSA,GBK,GEN,GB,GNK,CSV,TXT,XLS,ABI,AB1,SEQ,PMD,BIO,ALN,XML,PIR,NBF
Operating system Windows
Computer skills Advanced
Version 7.0.4
Maintained No

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Additional information


https://www.gerfbb.com/images/upload/article/pdf/1387127438_Alzohairy%20et%20al%202011.pdf http://www.mbio.ncsu.edu/BioEdit/page2.html

BioEdit citations

 (4753)
call_split

Detection of Anopheles rivulorum like, a member of the Anopheles funestus group, in South Africa

2018
Malar J
PMCID: 5952852
PMID: 29764433
DOI: 10.1186/s12936-018-2353-y
call_split See protocol

[…] y Koekemoer et al. [].Subsequently, the PCR products of the ITS2 region from the three specimens were purified and sequenced by Macrogen Inc. The chromatograms of the sequences were analysed by using BioEdit version 7.2.5 []. The resulting sequences of the 3 specimens were compared to each other by using the Muscle multiple sequence alignment [] and a consensus sequence was established. Subsequent […]

call_split

Virulent PB1 F2 residues: effects on fitness of H1N1 influenza A virus in mice and changes during evolution of human influenza A viruses

2018
Sci Rep
PMCID: 5945659
PMID: 29749408
DOI: 10.1038/s41598-018-25707-y
call_split See protocol

[…] n initiating ATG codon at the appropriate position were excluded from counts. The PB1-F2 protein sequences were sorted into two groups (of 62 amino acids or longer and 61 amino acid or shorter) using BioEdit (v7.1.3.0). Sequences of 62 amino acid or longer were saved as MEGA files, displayed and exported to MS EXCEL. The inflammatory (L62, R75, R79, and L82) or/and cytotoxic (I68, L69, and V70) PB […]

call_split

MALDI TOF MS for identification of Tsukamurella species: Tsukamurella tyrosinosolvens as the predominant species associated with ocular infections

2018
PMCID: 5940693
PMID: 29739926
DOI: 10.1038/s41426-018-0083-4
call_split See protocol

[…] equences of the PCR products were compared with sequences of all currently recognized Tsukamurella species by multiple sequence alignment using MUSCLE 3.8 and the aligned sequences were trimmed using BioEdit 7.2.0. Comparative gene sequence analysis was performed using BioEdit 7.2.0. Phylogenetic tree was constructed by maximum-likelihood method using MEGA version 6. […]

library_books

Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

2018
BMC Genomics
PMCID: 5941688
PMID: 29739320
DOI: 10.1186/s12864-018-4714-x

[…] mum overlap of 50 bp between the two sequences and a minimum DNA identity of 95%. Final retrotransposon sequences were assembled from their fragments using the Cap contig assembly program included in BioEdit v7.2.5 []. We then designed specific primer pairs that we used to amplify the desired pol fragments (Additional file ). We obtained DNA cloned fragments from 1.0 to 1.5 kb size, depending on t […]

library_books

Assessing the Zoantharian Diversity of the Tropical Eastern Pacific through an Integrative Approach

2018
Sci Rep
PMCID: 5940898
PMID: 29739963
DOI: 10.1038/s41598-018-25086-4

[…] Each chromatogram was checked for quality using BioEdit software version 7.2.5.0. or Geneious 10.2.2 and trimmed appropriately. Multiple alignments were generated for each gene region from resulting FastA sequences, which were aligned by eye using […]

call_split

Cryptic diversity: Two morphologically similar species of invasive apple snail in Peninsular Malaysia

2018
PLoS One
PMCID: 5937749
PMID: 29734361
DOI: 10.1371/journal.pone.0196582
call_split See protocol

[…] ere selected from different countries from each clade to produce a final tree including 20 representative sequences () Sequences were checked using Chromas 1.42 (Technelysium Pty.Ltd., Australia) and BioEdit 7.0.9.0 [] software and aligned using CLUSTAL X program []. Akaike’s Information Criterion (AIC) was used to estimate the best fit model for each of the three codon positions for COI using Pro […]


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