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bíogo specifications


Unique identifier OMICS_16273
Name bíogo
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes




No version available



  • person_outline Daniel Kortschak
  • person_outline David Adelson

Publication for bíogo

bíogo citation


HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse

PLoS Genet
PMCID: 4619860
PMID: 26496356
DOI: 10.1371/journal.pgen.1005620

[…] of henmt1 function leads to instability of both mili and miwi associated pirnas., to further explore the precise nature of rna shortening we examined a variety of pirna characteristics using the bíogo bioinformatics toolkit. initially, wild type pirnas were analysed according to alignment length and genomic location. this involved filtering aligned reads by sequence, mapping quality, […]

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bíogo institution(s)
School of Molecular and Biomedical Science, University of Adelaide, Adelaide, WA, Australia
bíogo funding source(s)
Supported by The University of Adelaide and The National Health and Medical Research Council [grant number 1011334].

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