BioGraph specifications

Information


Unique identifier OMICS_06558
Name BioGraph
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for BioGraph

BioGraph in publications

 (12)
PMCID: 5549357
PMID: 28789679
DOI: 10.1186/s12920-017-0286-x

[…] methods according to the following criteria: 1) fully available in web service platform and 2) requiring only the disease name for gene prioritization. under these conditions we found 12 methods: biograph [], candid [], glad4u [], polysearch [], cipher [], guildify [], disgenet [], geneprospector [], genie [], snps3d [], genedistiller [] and metaranker []. the following methods: cipher, […]

PMCID: 4741023
PMID: 26847462
DOI: 10.1186/s12863-016-0341-1

[…] system (http://www.pantherdb.org/). furthermore, the pathways of myh1 were analyzed using the kyoto encyclopedia of gene and genomics (kegg) tool (http://www.genome.jp/kegg/pathway.html). the biograph tool (http://www.biograph.be) and toppgene suite (https://toppgene.cchmc.org//) were used for in-deep graphical representation of biological processes and gene pathway analysis, […]

PMCID: 4821694
PMID: 26480920
DOI: 10.1038/ijo.2015.217

[…] the hapmap database was 100%., in order to prioritize gene/loci showing evidence of association and to explore the possible functional links among these loci and obesity-related traits, we used the biograph knowledge-mining software (). biograph assembles and analyzes information from 22 heterogeneous biomedical databases via unsupervised data mining techniques and stochastic random walks […]

PMCID: 4413438
PMID: 25937794
DOI: 10.2478/bjmg-2014-0070

[…] are considered as “intermediate” and were excluded from further analysis []. for further analysis of all genes with dmrs revealed from pool analysis (726) we used online data mining service (biograph; http://biograph.be/). it was very helpful in identification of susceptibility genes, because it used different databases and analyses functional relations in order to rank the genes […]

PMCID: 3795720
PMID: 24146904
DOI: 10.1371/journal.pone.0076666

[…] prioritization . however, few of the reported caries genes have been rigorously replicated or confirmed to date . instead of using such gold standard genes, we explored a comprehensive database, biograph , to identify genes for training purpose. biograph is a data mining platform for the discovery of biomedical knowledge. it integrates 21 publicly available curated databases encompassing […]


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BioGraph institution(s)
Applied Molecular Genomics group, VIB Department of Molecular Genetics, Universiteit Antwerpen, Wilrijk, Belgium; Advanced Database Research and Modelling group, Department of Mathematics and Computer Science, Universiteit Antwerpen, Antwerpen, Belgium; Computational Linguistics and Psycholinguistics Research Center, Universiteit Antwerpen, Antwerpen, Belgium
BioGraph funding source(s)
Supported by the GOA project ‘BioGraph: Text mining on heterogeneous databases: An application to optimized discovery of disease relevant genetic variants’ of the University of Antwerp, Belgium.

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