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Protocols

BioHealthBase specifications

Information


Unique identifier OMICS_20922
Name BioHealthBase
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No

Taxon


  • Viruses
    • Influenza A virus
    • Influenza A virus (A/Puerto Rico/8/1934(H1N1))
    • Influenza B virus

Maintainer


This tool is not available anymore.

Publication for BioHealthBase

BioHealthBase citations

 (6)
library_books

Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay

2009
BMC Microbiol
PMCID: 2767358
PMID: 19811647
DOI: 10.1186/1471-2180-9-213

[…] using our whole genome high-density resequencing array platform []. All the sequence and SNP information is publicly available to the scientific community from Biodefense and Public Health Database (BioHealthBase) at http://www.biohealthbase.org/GSearch/home.do?decorator=Francisella. BioHealthBase is a Bioinformatics Resource Center (BRC) for biodefense and emerging/re-emerging infectious disease […]

library_books

Complete Genome Sequence of Francisella tularensis Subspecies holarctica FTNF002 00

2009
PLoS One
PMCID: 2737636
PMID: 19756146
DOI: 10.1371/journal.pone.0007041

[…] Genome annotation was performed at BioHealthBase (www.biohealthbase.org) using TIGR's gene prediction algorithm, Glimmer3 , automated annotation pipeline, AutoAnnotate , followed by manual curation using Manatee . The genome sequence w […]

call_split

Invasions by Eurasian Avian Influenza Virus H6 Genes and Replacement of Its North American Clade

2009
PMCID: 2744232
PMID: 19624918
DOI: 10.3201/eid1507.090245
call_split See protocol

[…] ide sequences and information on host, sampling date, and location were obtained for all H6 nucleotide sequences from the National Center for Biotechnology Information Influenza Sequence Database and BioHealthBase (,) by using the following keywords: influenza A, H6, and avian host. All H6 sequences above the length of 1,650 nt were retained, and duplicate sequences of the same isolates were remov […]

library_books

Evolution of the M gene of the influenza A virus in different host species: large scale sequence analysis

2009
Virol J
PMCID: 2694789
PMID: 19476650
DOI: 10.1186/1743-422X-6-67

[…] he entire tree (eFEL) or only the interior branches (iFEL). iFEL is essentially the same as eFEL, except that selection is only tested along the internal branches of the phylogeny [].Uniprot ("") and BioHealthBase ("") were used to generate 3D crystal structures and to determine the location of epitope sites. Accession numbers: [GeneBank protein GI 89779323, strain A/Puerto Rico/8/34, PDB ID 1AA7, […]

library_books

Whole genome identification of Mycobacterium tuberculosis vaccine candidates by comprehensive data mining and bioinformatic analyses

2008
BMC Med Genomics
PMCID: 2442614
PMID: 18505592
DOI: 10.1186/1755-8794-1-18

[…] abase on Mycobacterium tuberculosis genetics [], TBDB – an integrated platform for TB drug discovery [], MTBreg – The Database of Conditionally Regulated Proteins in Mycobacterium tuberculosis [] and BioHealthBase – the Biodefense and Public Health Database []. Functional categories provided for the selected ORF products were as implemented in [,], and their assignment to each of the antigen was d […]

library_books

The Influenza Primer Design Resource: a new tool for translating influenza sequence data into effective diagnostics

2008
Influenza Other Respir Viruses
PMCID: 4634328
PMID: 19453490
DOI: 10.1111/j.1750-2659.2007.00031.x

[…] we designed IPDR’s search interface to be similar with some minor changes to the subtype search so users would be able to retrieve the exact subset of sequences that they are interested in. IVDB and BioHealthBase also use a similar search interface, but ISD uses a slimmed down search interface that can unfortunately make it more difficult to retrieve the sequences a user is interested in.Generall […]

Citations

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BioHealthBase institution(s)
University of Texas Southwestern Medical Center, Dallas, TX, USA; Los Alamos National Laboratory, Los Alamos, NM, USA; Mt Sinai School of Medicine, New York, NY, USA; Vecna Technologies, College Park, MD, USA; Northrop Grumman IT, Rockville, MD, USA
BioHealthBase funding source(s)
Supported by Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. N01-AI40041.

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