Bioimaging software tools

Bioimaging applications

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the…

Bioimaging software tools

Most Recent Tools

Desktop app
OpenSlide OpenSlide

OpenSlide

Reads and manipulates digital slides of diverse vendor formats. OpenSlide…

Reads and manipulates digital slides of diverse vendor formats. OpenSlide interface can transparently handle multiple vendor formats. It is in use today by many academic and industrial organizations…

Desktop app
Sharpa Sharpa

Sharpa

Provides early image quality feedback and automatically identifies regions of…

Provides early image quality feedback and automatically identifies regions of the image that require additional focus points. Sharpa is a sharpness assessment tool for NDPI whole slide images, also…

Desktop app
slideToolkit slideToolkit

slideToolkit

Handles large quantities of low contrast whole slides images using advanced…

Handles large quantities of low contrast whole slides images using advanced cell detecting algorithms. The slideToolkit has been developed for modern personal computers and high-performance clusters.…

Desktop app
QuPath QuPath

QuPath

Meets the growing need for a user-friendly, extensible, open-source solution…

Meets the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. QuPath provides researchers with powerful batch-processing and…

Most Popular Tools

Desktop app
NeurphologyJ NeurphologyJ

NeurphologyJ

A quantification method capable of automatically quantifying neuronal…

A quantification method capable of automatically quantifying neuronal morphologies such as soma number and size, neurite length, and neurite branching complexity (which is highly related to the…

Desktop app
UMATracker UMATracker

UMATracker

An open-source quantitative analysis toolkit for animal experiments. UMATracker…

An open-source quantitative analysis toolkit for animal experiments. UMATracker provides a video preprocessing by the visual programming and estimates positions and/or orientations of each animals.…

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