Bioimaging software tools

Bioimaging applications

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the…

Bioimaging software tools

Most Recent Tools

calcFD
Desktop

calcFD

Calculates the fractal dimensionality of a 3D structure. calcFD is designed to…

Calculates the fractal dimensionality of a 3D structure. calcFD is designed to work with intermediate files from FreeSurfer analysis pipeline, but can also use other volumes. The toolbox includes…

BrainBrowser
Desktop
Web

BrainBrowser

Exposes a set of web-based 3D visualization tools primarily targeting…

Exposes a set of web-based 3D visualization tools primarily targeting neuroimaging. Using open web technologies, such as WebGL and HTML5, BrainBrowser allows for real-time manipulation and analysis…

Preprocessed…
Desktop

Preprocessed Connectomes Project

Aims to systematically preprocess the data from the 1000 Functional Connectomes…

Aims to systematically preprocess the data from the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI) and openly share the results. The…

Mindcontrol
Desktop
Web

Mindcontrol

Provides an open-source web application for the collaborative quality control…

Provides an open-source web application for the collaborative quality control of neuroimaging processing outputs. The Mindcontrol platform consists of a dashboard to organize data, descriptive…

Most Popular Tools

NeurphologyJ
Desktop

NeurphologyJ

A quantification method capable of automatically quantifying neuronal…

A quantification method capable of automatically quantifying neuronal morphologies such as soma number and size, neurite length, and neurite branching complexity (which is highly related to the…

UMATracker
Desktop

UMATracker

An open-source quantitative analysis toolkit for animal experiments. UMATracker…

An open-source quantitative analysis toolkit for animal experiments. UMATracker provides a video preprocessing by the visual programming and estimates positions and/or orientations of each animals.…

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