Bioimaging software tools

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development…

Bioimaging applications

Most recent bioinformatics tools

QTree
Desktop

QTree

Creates CPK coloring, Ball and Stick and worm pictures of molecules. QTree is…

Creates CPK coloring, Ball and Stick and worm pictures of molecules. QTree is able to generate near-photographic quality images though it does not generate shadows. It offers functions to colouring…

Endrov
Desktop

Endrov

Allows image analysis for both acquisition and postprocessing. Endrov is…

Allows image analysis for both acquisition and postprocessing. Endrov is capable of controlling light and fluorescence microscopes and many types of cameras by accessing µManager device adaptors. It…

BrainPrint
Desktop

BrainPrint

Allows construction of a similarity measure between brain scans. BrainPrint…

Allows construction of a similarity measure between brain scans. BrainPrint facilitates the statistical analysis by computing distances between shape descriptors without the need for establishing…

SPANOL
Algorithm

SPANOL SPectral ANalysis Of Lobes

Segments a cortical surface in a few parcels that have strong similarities with…

Segments a cortical surface in a few parcels that have strong similarities with brain lobes. Spanol provides a segmentation of cortical surface by using a K-means clustering of Laplace-Beltrami…

Most popular analytical software

NeurphologyJ
Desktop

NeurphologyJ

A quantification method capable of automatically quantifying neuronal…

A quantification method capable of automatically quantifying neuronal morphologies such as soma number and size, neurite length, and neurite branching complexity (which is highly related to the…

BCT
Desktop

BCT Brain Connectivity Toolbox

A Matlab toolbox for analysis of complex brain networks. The toolbox contains…

A Matlab toolbox for analysis of complex brain networks. The toolbox contains network analysis functions and complex brain network datasets. These measures are increasingly used to characterize…

Quantinetix
Desktop

Quantinetix

Provides quantitation of target compounds (taking into account biological…

Provides quantitation of target compounds (taking into account biological matrix effect) following Mass spectrometry imaging experiments. Quantinetix is a Quantitative Imaging Mass Spectrometry…

UMATracker
Desktop

UMATracker

An open-source quantitative analysis toolkit for animal experiments. UMATracker…

An open-source quantitative analysis toolkit for animal experiments. UMATracker provides a video preprocessing by the visual programming and estimates positions and/or orientations of each animals.…

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