Bioimaging software tools

Bioimaging applications

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the…

Bioimaging software tools

Most Recent Tools

UCSF Tomography
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UCSF Tomography

Collects single-axis tilt series on electron transmission microscopes. UCSF…

Collects single-axis tilt series on electron transmission microscopes. UCSF Tomography is a software that was implemented based upon an approach in which the compustage tilting is modeled as…

MotionCorr
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MotionCorr

Corrects whole frame image motion recorded with dose fractionated image stack.…

Corrects whole frame image motion recorded with dose fractionated image stack. MotionCorr is a bioinformatic software that greatly enhances image quality and data acquisition efficiency - key…

UCSFImage
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UCSFImage

Facilitates efficient acquisition, on-the-fly motion correction, and CTF…

Facilitates efficient acquisition, on-the-fly motion correction, and CTF analysis of dose fractionated image stacks. UCSFImage is a computer-assisted system for semi-automated electron cryomicroscopy…

MotionCor2
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MotionCor2

Corrects beam-induced sample motion on dose fractionated movie stacks.…

Corrects beam-induced sample motion on dose fractionated movie stacks. MotionCor2 is a multi-GPU program that implements a robust iterative alignment algorithm that delivers precise measurement and…

Most Popular Tools

NeurphologyJ
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NeurphologyJ

A quantification method capable of automatically quantifying neuronal…

A quantification method capable of automatically quantifying neuronal morphologies such as soma number and size, neurite length, and neurite branching complexity (which is highly related to the…

UMATracker
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UMATracker

An open-source quantitative analysis toolkit for animal experiments. UMATracker…

An open-source quantitative analysis toolkit for animal experiments. UMATracker provides a video preprocessing by the visual programming and estimates positions and/or orientations of each animals.…

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