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Bioimaging software tools

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development…

Bioimaging applications

Photonic bioimaging

Electron microscopy

Magnetic Resonance Imaging

Electrophysiology

Other bioimaging technologies

Image treatment

Image analysis

Image databases

Most recent bioinformatics tools

DCMCHECK
Desktop

DCMCHECK

Allows to test and validate DICOM pictures. DCMCHECK is able to detect images…

Allows to test and validate DICOM pictures. DCMCHECK is able to detect images into a file and to verify their conformance with the DICOM standard. It can build some test reports that precisely…

STSE
Desktop

STSE Spatio-Temporal Simulation Environment

Assists in constructing microscopy image-based simulations. STSE is a software…

Assists in constructing microscopy image-based simulations. STSE is a software platform allowing an uninterrupted workflow including digitization, representation, analysis, and mathematical modeling.…

Scalable Brain…
Web

Scalable Brain Atlas

Allows users to browse brain atlases. Scalable Brain Atlas centralizes multiple…

Allows users to browse brain atlases. Scalable Brain Atlas centralizes multiple repositories among seven species (macaque, mouse, rat, human, marmoset, opossum and ferret). The application includes a…

Brain/MINDS
Dataset

Most popular analytical software

NeurphologyJ
Desktop

NeurphologyJ

A quantification method capable of automatically quantifying neuronal…

A quantification method capable of automatically quantifying neuronal morphologies such as soma number and size, neurite length, and neurite branching complexity (which is highly related to the…

BCT
Desktop

BCT Brain Connectivity Toolbox

A Matlab toolbox for analysis of complex brain networks. The toolbox contains…

A Matlab toolbox for analysis of complex brain networks. The toolbox contains network analysis functions and complex brain network datasets. These measures are increasingly used to characterize…

Quantinetix
Desktop

Quantinetix

Provides quantitation of target compounds (taking into account biological…

Provides quantitation of target compounds (taking into account biological matrix effect) following Mass spectrometry imaging experiments. Quantinetix is a Quantitative Imaging Mass Spectrometry…

UMATracker
Desktop

UMATracker

An open-source quantitative analysis toolkit for animal experiments. UMATracker…

An open-source quantitative analysis toolkit for animal experiments. UMATracker provides a video preprocessing by the visual programming and estimates positions and/or orientations of each animals.…

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