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Bioinformatics Toolbox specifications


Unique identifier OMICS_26967
Name Bioinformatics Toolbox
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use License purchase required
Input data Some genomic and proteomic data.
Input format SAM,FASTA,CEL,CDF
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Medium
Stability Stable
Free trial Yes
Maintained Yes


No version available


Additional information

Bioinformatics Toolbox citations


Anti NMDA Receptor Encephalitis and Vaccination

Int J Mol Sci
PMCID: 5297824
PMID: 28106787
DOI: 10.3390/ijms18010193
call_split See protocol

[…] miRNA, including the 5p mature miRNA sequence and 3p mature miRNA sequence, can provide more information of miRNAs than only using mature miRNA sequences.The phylogenetic trees are plotted using the Bioinformatics Toolbox of MATLAB []. To plot phylogenetic trees, we need to select a distance method to calculate the pairwise distances between two sequences and to select a linkage method to build a […]


Auditory modulation of visual stimulus encoding in human retinotopic cortex

PMCID: 3625122
PMID: 23296187
DOI: 10.1016/j.neuroimage.2012.12.061

[…] i.e. did stimulus decoding accuracy vary depending on audiovisual condition, cf. ). Stimulus decoding was performed using custom code using the linear support vector machine (lSVM) implemented in the Bioinformatics toolbox for MATLAB (version R2010b, Data from each condition were used for training and testing of separate classifiers to get condition-specific decoding acc […]


Self Calibrated Warping for Mass Spectra Alignment

Cancer Inform
PMCID: 3085421
PMID: 21552490
DOI: 10.4137/CIN.S6358

[…] ns obtained from RAFFT and SCW are remarkable similar to each other, except for one small segment that is shown in (B) and (C), where obvious singularities are introduced by RAFFT.MSAlign from Matlab Bioinformatics Toolbox (MSA)MSA aligns a spectrum based on peak alignment, and it requires the user to identify the signature peak locations as the input to the alignment algorithm. It linearly scales […]


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Bioinformatics Toolbox institution(s)
MathWorks, Meudon, FRANCE

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