BioJava-ModFinder specifications


Unique identifier OMICS_16299
Name BioJava-ModFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Peter Rose

Publication for BioJava-ModFinder

BioJava-ModFinder citation


BioJava ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank

PMCID: 5870676
PMID: 28334105
DOI: 10.1093/bioinformatics/btx101
call_split See protocol

[…] All source code and the protein modification XML file have been released as a BioJava package named BioJava-ModFinder, which is available at It is straightforward to identify protein modifications using the ModFinder application programming interface (API). A tutorial for the […]

BioJava-ModFinder funding source(s)
This work was supported, in part, by Google Summer of Code 2010 program, National Institutes of Health Grant (R33-GM078601 and R01-GM100701), National Science Foundation (NSF DBI-0829586 and NSF DBI-1338415), National Institute of General Medical Sciences (NIGMS), Office of Science Department of Energy (DOE), National Library of Medicine (NLM), National Cancer Institute (NCI), National Institute of Neurological Disorders and Stroke (NINDS), and the National Institute of Diabetes & Digestive & Kidney Diseases (NIDDK).

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