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Biological network data

Biological network data steps

Most recent bioinformatics tools

miRDR
Dataset

miRDR microRNA Dynamic Regulation Database

Provides data about dynamic miRNA-gene interactions, particularly focusing on…

Provides data about dynamic miRNA-gene interactions, particularly focusing on the conditional interactions that are associated with tumor progression in multiple human cancers. miRDR concerns cancers…

ZhaoEtAl2017
Desktop

ZhaoEtAl2017

Provides current experimental knowledge of the proximal hepatic insulin…

Provides current experimental knowledge of the proximal hepatic insulin signaling network. This model provides a sequential method of postprandial hepatic control of glucose and lipid by insulin,…

CCC
Web

CCC Carrier Cycling Casca

Provides a simple motif designated as a which simultaneously considers the…

Provides a simple motif designated as a which simultaneously considers the dynamics of substrates and coenzymes. The carrier cycling cascade (CCC) is a minimal model of metabolic systems that…

GEB052 model
Nontypeable

GEB052 model Glucocorticoid receptor model by Emyr Bakker

Provides a Boolean model for the glucocorticoid receptor (GR) interaction…

Provides a Boolean model for the glucocorticoid receptor (GR) interaction network similar to the p53 interactomes. The GEB052 model consists of 52 nodes connected by 241 logical interactions, and has…

Most popular analytical software and databases

BiGG Models
Dataset

BiGG Models

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG…

A completely redesigned Biochemical, Genetic and Genomic knowledge base. BiGG Models contains more than 75 high-quality, manually-curated genome-scale metabolic models. On the website, users can…

NCG
Dataset

NCG Network of Cancer Genes

A manually curated repository of cancer genes derived from the scientific…

A manually curated repository of cancer genes derived from the scientific literature. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational…

PathCaseMAW
Web

PathCaseMAW PathCase Metabolomics Analysis Workbench

Provides a database-enabled framework and Web-based computational tools for…

Provides a database-enabled framework and Web-based computational tools for browsing, querying, analyzing and visualizing stored metabolic networks. PathCaseMAW is easy to work with by design, and is…

MEMOSys
Dataset

MEMOSys MEtabolic MOdel research and development System

A versatile database for the management, storage and development of…

A versatile database for the management, storage and development of genome-scale models (GEMs). Since its initial release, the database has undergone major improvements, and the new version…

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