Measures callose deposits in an automatic way. Callose Measure can recognize particle-like signals thanks to spot detection algorithms. It integrates an edge detection method based on the border tracing approach. This tool is able to conduct sensitive edge-based measurements on size and shape. It can filter out noise signals, split fused fluorescence signals, measure the size/shape of identified callose objects, and recognise patterns of spreading callose.
Digital reconstruction of neuronal arborizations is an important step in the quantitative investigation of cellular neuroanatomy. Neuron_Morpho is plugin for the popular Java application ImageJ that mediates the digital reconstruction of neurons from image stacks.
Allows automatic reconstruction of entire tissue blocks. AnalyzeSkeleton calculates the optimum transformation at each pyramid level. It is able to store cellular-level phenotypic information. The tool (1) acquires images, (2) automatically and rigidly registers them, (3) segments the structures of interest, (4) groups their resulting contours, (5) locally or elastically refines registration, and (6) reconstructs structure in 3D based on the grouped contours.
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