Biological component databases | Synthetic biology
The concept of standard biological parts is central to synthetic biology. Biological parts are annotated DNA sequences that can be combined to make larger genetic systems (Benner and Sismour, 2005; Endy, 2005). Initially, parts standardization focused on specific assembly…
dim reduction
Desktop

dim reduction

Helps to discover hidden data properties and detect data quality issues.…

Helps to discover hidden data properties and detect data quality issues. dim_reduction combines normalized edit distance with Isomap and Laplacian Eigenmaps, to visualized synthetic biology biobricks…

CompuBioTicDB
Data

CompuBioTicDB

A database of biological components for synthetic biology. CompuBioTicDB stores…

A database of biological components for synthetic biology. CompuBioTicDB stores biological molecules, such as proteins and metabolites, as well as devices such as sensors, switches or timekeepers,…

GenoLIB
Data

GenoLIB

A library of biological parts from the database of plasmid features. The…

A library of biological parts from the database of plasmid features. The library was formatted using the synthetic biology open language (SBOL), an emerging standard developed to better organize…

BPA
Data

BPA BioBrick Public Agreement

A free-to-use legal tool that allows individuals, companies, and institutions…

A free-to-use legal tool that allows individuals, companies, and institutions to make their standardized biological parts free for others to use.

iGEM Registry
Data

iGEM Registry international Genetically Engineered Machine

A growing collection of genetic parts that can be mixed and matched to build…

A growing collection of genetic parts that can be mixed and matched to build synthetic biology devices and systems. As part of the synthetic biology community's efforts to make biology easier to…

Virtual Parts
Data

Virtual Parts

A repository of standard virtual parts (SVPs) which are reusable, modular and…

A repository of standard virtual parts (SVPs) which are reusable, modular and composable models of physical biological parts. These models can be joined together computationally in order to…

JBEI-ICE
Web

JBEI-ICE Joint BioEnergy Institute Inventory of Composable Elements

Provides an open, flexible and fully featured platform for synthetic biology…

Provides an open, flexible and fully featured platform for synthetic biology information storage, retrieval and manipulation. JBEI-ICE brings together different synthetic biology software by lowering…

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