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BRANE Clust

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Refines gene regulatory network (GRN) inference thanks to cluster information. BRANE Clust works as a post-processing tool for inference methods. The clustering is based on the inversion of a system of linear equations involving a graph-Laplacian matrix promoting a modular structure. The tool relies on an optimization procedure which computes an optimal gene clustering (random walker algorithm) and an optimal edge selection jointly.

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BRANE Clust classification

  • Eubacteria
    • Escherichia coli
  • Fungi

BRANE Clust specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
MATLAB
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Source code URL:
http://www-syscom.univ-mlv.fr/~pirayre/Software/BRANEClust_Pack.7z

BRANE Clust distribution

versioning

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No versioning.

BRANE Clust support

Maintainer

  • Aurélie Pirayre <>

Credits

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Publications

Institution(s)

IFP Energies nouvelles, Rueil-Malmaison, France; Facebook AI Research, Paris, France; CentraleSupélec, Châtenay-Malabry, France

Link to literature

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