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Information
| Unique identifier | OMICS_18933 |
|---|---|
| Name | BioLuminate |
| Software type | Toolkit/Suite |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Free trial | Yes |
| Registration required | Yes |
| Maintained | Yes |
Subtool
- AggScore
Versioning
No version available
Documentation
Maintainer
- person_outline QikProp Team
Additional information
Publications for BioLuminate
AggScore: Prediction of Aggregation-Prone Regions in Proteins based on the Distribution of Surface Patches.
Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction.
BioLuminate citations
(16)Structural Insight Into the Role of Mutual Polymorphism and Conservatism in the Contact Zone of the NFR5–K1 Heterodimer With the Nod Factor
[…] We performed protein–protein docking for the major haplotypes of NFR5 and K1 receptors in the Schrödinger BioLuminate module. The 30 output complexes passed the first manual selection step with respect to an adequate orientation of complexes to a possible cell membrane. If the putative location of the tra […]
Immunodominance in T cell responses elicited against different domains of detoxified pneumolysin PlyD1
[…] as the template []. The structural coordinates of the template were obtained from the Protein Data Bank []. PlyD1 mutations T65C, G293C and C428A were introduced into the wild-type 3D structure using BioLuminate (Release 2015–3, Schrödinger, LLC, New York, NY, 2015). For each substitution, all residues within a 4 Å cut-off distance from the mutation site were refined in order to accommodate the ne […]
Computational modeling suggests impaired interactions between NKX2.5 and GATA4 in individuals carrying a novel pathogenic D16N NKX2.5 mutation
[…] eatMusic. The PDB file of NKX2.5-GATA4 complex was prepared and submitted to DrugScorePPI and BeatMusic webserver and the chain of interest was selected for alanine scanning. The residues scanning in BioLuminate was performed through residue scanning/affininty maturation panel in biologics with refinement option set to side-chain prediction and backbone minimization, the cutoff distance was set to […]
A CK1 FRET biosensor reveals that DDX3X is an essential activator of CK1ε
[…] Molecular modeling was performed on a Lenovo ThinkPad T440p (Lenovo) using Schrödinger Suite Maestro (Maestro, version 10.2, Schrödinger, LLC, 2015) and Schrödinger Biologics Suite (BioLuminate, version 1.9, Schrödinger, LLC, 2015). A human DDX3X model was generated based on the high-resolution structure PDB 2I4I (resolution, 2.2 Å) using the protein preparation wizard (standard […]
Identification of a New Potent Inhibitor Targeting KRAS in Non small Cell Lung Cancer Cells
[…] in the Prep Wiz module of Maestro (Version 9.1, Schrodinger) and water molecules within 5 Å of het groups were kept. Subsequently, the residues of D12 and Q61 were mutated into C12 and H61 using the BioLuminate module of Maestro, respectively. A grid file was generated based on the position of compound BZIM in the Grid Generation wizard. Then, 0375-0604 was prepared to assign atomic charges and g […]
Functional alterations due to amino acid changes and evolutionary comparative analysis of ARPKD and ADPKD genes
[…] wn. Using computational approach provides binary classifications (impact/neutral) along with a more rational score. Additionally, we get information about the protein's stability through Schrodinger (BioLuminate, USA). In the mutated structure, the mutant residue was targeted in the native protein structure. Many known disease-related nsSNPs in proteins with identified 3D protein structure will ha […]
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