bioNerDS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool bioNerDS
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Tool usage distribution map

This map represents all the scientific publications referring to bioNerDS per scientific context
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Associated diseases

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bioNerDS specifications

Information


Unique identifier OMICS_04833
Name bioNerDS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Robert Stevens

Publication for bioNerDS

bioNerDS citations

 (3)
library_books

A Survey of Bioinformatics Database and Software Usage through Mining the Literature

2016
PLoS One
PMCID: 4917176
PMID: 27331905
DOI: 10.1371/journal.pone.0157989

[…] t.Our medicine corpus shows a slightly different story—there are more mentions that may stem from false-positive mentions (e.g., healthcare, ECG, effective, etc.); this is likely to be an artefact of bioNerDS being trained on bioinformatics rather than medical text. That said, medicine shows a clear preference for SPSS and Stata over R for statistical processing (with double the mean number of SPS […]

library_books

Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature

2016
PLoS One
PMCID: 5156472
PMID: 26730820
DOI: 10.1371/journal.pone.0146300

[…] expressions expressed as transition networks for resource naming, functionality detection and resource classification for resource inventory generation. BIRI is generated on 400 biomedical abstracts. BioNERDS [] is a named entity recognition (NER) system for detecting database and software names in the literature using extraction rules generated by examining 30 full text bioinformatics articles.In […]

library_books

Ambiguity and variability of database and software names in bioinformatics

2015
J Biomed Semantics
PMCID: 4485340
PMID: 26131352
DOI: 10.1186/s13326-015-0026-0

[…] The datasets supporting the results of this article are available at: http://sourceforge.net/projects/bionerds/. […]


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bioNerDS institution(s)
School of Computer Science, The University of Manchester, Manchester, UK

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