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|Restrictions to use||None|
|Database management system||MSSQL Server|
|User data submission||Allowed|
Publication for BioNumbers
A chiral selectivity relaxed paralog of DTD for proofreading tRNA mischarging in Animalia
[…] sms whose genomes have been completely sequenced was obtained from KEGG GENOME database (http://www.genome.jp/kegg/genome.html). Information about genome size was taken from the web server http://www.bionumbers.hms.harvard.edu/default.aspx. Multiple sequence alignment of tRNAThr and tRNAThr(G4•U69) was prepared using T-Coffee server in M-Coffee mode (http://tcoffee.crg.cat/apps/tcoffee/do:mcoffee) […]
Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution
[…] y parameters related to translation (e.g. ribosomes’ size, initiation rates, codon decoding rates, diffusion coefficients, etc) based on measurements or estimations is the biological numbers database BioNumbers (). Parameters from this database can be used in future development of translation models.It is important to emphasize that some of the translation parameters (e.g. ribosome footprint size) […]
Stochastic Cellular Fate Decision Making by Multiple Infecting Lambda Phage
[…] proach used the Gibson-Bruck implementation of the Gillespie algorithm. Spatial modelling was carried using a Monte Carlo particle-based tool, Smoldyn . The diffusion constants used were found using Bionumbers and are shown in . For both spatial and non-spatial simulations, data points were output at every minutes. The analysis of the generated data was carried out in Matlab (version R2012a). T […]
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