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BioNumerics specifications

Information


Unique identifier OMICS_02541
Name BioNumerics
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/BioNumerics

Versioning


No version available

Maintainer


  • person_outline GelCompar II Team

BioNumerics citations

 (691)
library_books

Cholera Epidemic in South Sudan and Uganda and Need for International Collaboration in Cholera Control

2018
PMCID: 5938777
PMID: 29664387
DOI: 10.3201/eid2405.171651

[…] Roche Molecular Biochemicals, Indianapolis, IN, USA); and multilocus variable number tandem repeat (MLVA) analysis targeting 6 loci in the V. cholerae genome (), and by genotyping tests ()(). We used BioNumerics version 6.6 (Applied Maths, Inc., Austin, TX, USA) for clustering analysis ().All 56 isolates were V. cholerae O1 serotype Inaba, atypical El Tor biotype, based on rstRET, tcpAET, and ctxB […]

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Shiga Toxin Producing Escherichia coli Infection in Jönköping County, Sweden: Occurrence and Molecular Characteristics in Correlation With Clinical Symptoms and Duration of stx Shedding

2018
PMCID: 5939558
PMID: 29765909
DOI: 10.3389/fcimb.2018.00125
call_split See protocol

[…] s study were compared with HUS-associated enterohemorrhagic E. coli (HUSEC) collection strains (www.ehec.org) (Mellmann et al., ). A minimum spanning tree (MST) based on these STs was generated using BioNumerics version 7.6 (Applied Maths NV, Sint-Martens-Latem, Belgium). […]

library_books

Molecular Characterization of Clostridium difficile Isolates in China From 2010 to 2015

2018
Front Microbiol
PMCID: 5936795
PMID: 29760687
DOI: 10.3389/fmicb.2018.00845

[…] tructed using the 100 C. difficile strains tested in this study, which was based on the seven combined housekeeping genes sequences using the MEGA7 software. A minimum spanning tree was created using BioNumerics version 5.10, according to the MLST data profile of 100 strains in this study and 99 isolates in our previous study (). […]

library_books

Coral Bacterial Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution

2018
Front Microbiol
PMCID: 5934943
PMID: 29755445
DOI: 10.3389/fmicb.2018.00833

[…] DGGE band profiles were digitalized and converted to data matrices using the Bionumerics v6.0 package (Applied Maths) according to the manufacturer’s instructions. The matrices were ordered by non-metric dimensional scaling (NMDS) (; ) using a Bray-Curtis distance matrix. To a […]

library_books

Draft Genome Sequences of Six Multidrug Resistant Clinical Strains of Acinetobacter baumannii, Isolated at Two Major Hospitals in Kuwait

2018
Genome Announc
PMCID: 5908928
PMID: 29674542
DOI: 10.1128/genomeA.00264-18

[…] ce. Assembled genomes were submitted to NCBI Prokaryotic Genome Annotation Pipeline 4.1 for genome annotation. Assembly statistics and annotation parameters are provided in . SNPs were detected using BioNumerics 7.6 (Applied Maths, Belgium), relative to the genome of reference strain AYE and one of the strains included in this study (KUSSH36). The SNP analysis showed that five of the six Kuwaiti i […]

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Non tuberculous Mycobacterium species causing mycobacteriosis in farmed aquatic animals of South Africa

2018
BMC Microbiol
PMCID: 5899368
PMID: 29653505
DOI: 10.1186/s12866-018-1177-9
call_split See protocol

[…] ogenicum NCK 8640 was determined in the previous study describing the whole genome of this isolate [].The genetic relationship among the M. marinum isolates were inferred from the MIRU-VNTR using the BIONUMERICS software version. 7. 6 (www.appliedmaths.com) applying the unweighted group method with arithmetic average (UPGMA). […]

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BioNumerics institution(s)
Applied Maths NV, Sint-Martens-Latem, Belgium

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