BioOpt statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Constraint based methods chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

BioOpt specifications


Unique identifier OMICS_05177
Name BioOpt
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Stability No
Maintained No


Add your version

Publication for BioOpt

BioOpt in publications

PMCID: 5660601
PMID: 28964698
DOI: 10.1016/j.cels.2017.09.002

[…] deposited in the under accession number e-mtab-4651. an updated l. lactis model, iaop358, is available at metabolomics datasets are available at (fia-tof ms data) and (lc-ms/ms metabolomics data)., o.p. conceived […]

PMCID: 5111396
PMID: 27868089
DOI: 10.1128/mSystems.00065-16

[…] cytoplasm, and carboxysome) (see in the supplemental material). a summary of ijc568 network properties is given in , and a comparison with the ensemble is given in ., ijc568 model in excel format. bioopt format and raven sbml format are available for download at download data set s1, xls file, 0.5 mb., accompanying data sets used and produced in the manuscript. […]

PMCID: 4367363
PMID: 25654717
DOI: 10.3390/s150203362

[…] of waiting time before denoised data are available is an important step towards real-time visualization of processed hyperspectral data. the source code can be found at this includes an implementation of conventional mnf denoising., push-broom line-scanning hyperspectral cameras can be used for a wide range of applications, e.g., remote sensing, food […]

PMCID: 4192687
PMID: 25141288
DOI: 10.3390/metabo4030680

[…] through biomass synthesis reaction, being the biomass formation rate, is directly related to growth of the modeled organism. simulations were performed using the optgene software [], later termed bioopt [,], more information about the modeling mechanics can be found in montagud et al., 2010 []. readers will find in the model file where all reactions and simulated constraints are depicted […]

PMCID: 1682015
PMID: 17016516
DOI: 10.1038/msb4100085

[…] (mathworks inc.) were utilized for the model preprocessing summarized above and to call the algorithm written in c++ for reporter reaction identification. fba was performed using in-house software bioopt employing lindo api for linear optimization. deconvolution of peaks in gc–ms spectra for the identification of metabolites based on a metabolite library and for the random peak assignment […]

To access a full list of publications, you will need to upgrade to our premium service.

BioOpt institution(s)
Department of Chemical and Biological Engineering, Chalmers University of Technology, Göteborg, Sweden

BioOpt reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BioOpt