Bioparser specifications

Information


Unique identifier OMICS_26386
Name Bioparser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Maintainer


This tool is not maintained anymore.

Information


Unique identifier OMICS_26386
Name Bioparser
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Some BLAST (BLASTN, BLASTP, BLASTX, TBLASTN, TBLASTX) [NCBI or Washington University version], SSEARCH or HMMER (HMMSEARCH, HMMPFAM) outputs.
Input format FASTA,ASCII,XML
Output format TXT, HTML
Operating system Unix/Linux, Windows
Programming languages Perl
Database management system MySQL
Computer skills Medium
Version 1.2.3
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Bioparser Team

Publication for Bioparser

Bioparser citation

library_books

Genome Sequence of a Lancefield Group C Streptococcus zooepidemicus Strain Causing Epidemic Nephritis: New Information about an Old Disease

2008
PLoS One
PMCID: 2516327
PMID: 18716664
DOI: 10.1371/journal.pone.0003026

[…] The stand-alone-BLAST set of applications (ftp.ncbi.nih.gov/blast/) was used to make streptococcal genome gene content comparisons. Results of various BLAST comparisons were parsed using BioParser ( / www.dbbm.fiocruz.br/BioParserWeb). Homologous gene content between genomes was identified using tblastn to allow for potential genome-to-genome annotation differences. Orthologous gene c […]

Bioparser institution(s)
Department of Biotechnology and Molecular Biology, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, Brazil; Department of Genetics, Fernandes Figueira Institute, Fiocruz, Rio de Janeiro, Brazil
Bioparser funding source(s)
Supported by Consello Nacional de Desenvolvimento Cientifico e Technologico (CNPq), Programa de Apoio a Pesquisa Estrategica en Sauda - Fiocruz (PAPES-Fiocruz), World Health Organization – Special Programme for Research and Training in Tropical Diseases (WHO/TDR), United Nations University – Biotechnology for Latin America and tge Caribbean (UNU-BIOLAC LacBioNet) and Ciencia y Technologia para el Desarollo – Red Iberoamericana de Bioinformatica (CYTED-RIB).

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