BioPerl specifications


Unique identifier OMICS_04849
Name BioPerl
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes



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BioPerl articles

BioPerl citations

PMCID: 1805493

[…] according to different constraints and to thereby test, by a randomization procedure, the statistical significance of the occurrence of repeats surrounding introns. sequence manipulation was done in bioperl [64]. permutations were generated with the fisher-yates algorithm implemented in algorithm::numerical::shuffle [65]. for each intron and exon of interest, sets of 10,000 or 100,000 random […]

BioPerl institution(s)
University Program in Genetics, Duke University, Durham, NC, USA; National Research Council of Canada, Plant Biotechnology Institute, Saskatoon, Canada; AlgoNomics, Gent, Belgium; Department of Plant and Molecular Biology, University of California, Berkeley, CA, USA; Affymetrix, Inc., Emeryville, CA, USA; Open Bioinformatics Foundation, Somerville, MA, USA; Integrated Functional Genomics, IZKF, University Hospital Muenster, Muenster, Germany; The Welcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, Cambridge, UK; Department of Computer Science, Washington University, St. Louis, MO, USA; Genomics Institute of the Novartis Research Foundation (GNF), San Diego, CA, USA; European Bioinformatics Institute, Welcome Trust Genome Campus, Hinxton, Cambridge, UK; Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon SK, Canada; Berkeley Drosophila Genome Project, University of California, Berkeley, CA, USA; Cogina, New York City, NY, USA; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Institute of Molecular and Cell Biology, Singapore
BioPerl funding source(s)
Supported by the Open Bioinformatics Foundation; the Compaq and Sun Microsystems; NIH Genetics training grant T32 GM07754–22; NIH grant 1 K22 HG00056; NHGRI Grant K22 HG-00064-01; NIH grants HG00739 and P41HG02223 and EMBL core funding.

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