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BioPig | A Hadoop-based analytic toolkit for large-scale sequence data

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Allows to analyze genomic data using Apache Pig and Hadoop. BioPig is built on MapReduce and Hadoop and thus has both the scalability and robustness offered by Apache Hadoop, and the programmability and parallel data flow control offered by Pig. It also has the flexibility to be embedded into other languages to achieve the types of control flows such as loops and branches that are not currently available in the Pig language.

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BioPig forum

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BioPig classification

BioPig specifications

Unique identifier:
OMICS_01225
Interface:
Command line interface
Operating system:
Unix/Linux
Parallelization:
MapReduce
Version:
2.0
High performance computing:
Yes
Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Java, Shell (Bash)
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

BioPig distribution

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No versioning.

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BioPig support

Maintainer

  • Zhong Wang <>

Additional information

https://github.com/JGI-Bioinformatics/biopig

Credits

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Publications

Institution(s)

Department of Energy, Joint Genome Institute, Walnut Creek, CA, USA; Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA

Funding source(s)

Supported in part by the Office of Science of the U.S., Department of Energy under (Contract No. DE-AC02- 05CH112 and DE-AC02-05CH11231).

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