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BioPig specifications
Information
| Unique identifier | OMICS_01225 |
|---|---|
| Name | BioPig |
| Software type | Framework/Library |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Java, Shell (Bash) |
| Parallelization | MapReduce |
| Computer skills | Advanced |
| Version | 2.0 |
| Stability | Stable |
| High performance computing | Yes |
| Maintained | Yes |
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Versioning
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Maintainer
- person_outline Zhong Wang
Additional information
Publication for BioPig
BioPig citations
(3)A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data
[…] wtie [], or through a generic adaptor like Hadoop Streaming library) regular Linux applications cannot generally be used directly on it. Two interesting frameworks to simplify scripting in Hadoop are BioPig [] and SeqPig [], which are both built on top of the Apache Pig framework and are capable of automatically distributing data and parallelizing tasks.At the moment, however, Hadoop is incompatib […]
Applications of the MapReduce programming framework to clinical big data analysis: current landscape and future trends
[…] he solution. Moreover additional tuning of the local Hadoop configuration towards the genome comparison is expected to yield additional performance benefits. A bioinformatics processing tool known as BioPig has been built on the Apache’s Hadoop system and the Pig Latin data flow language []. Compared with traditional algorithms, BioPig has three major advantages: first, BioPig programmability redu […]
Genetic characterization of Uruguayan Pampa Rocha pigs with microsatellite markers
[…] breeds were included in the study: Berkshire, Celtic, Duroc, Iberian, Landrace, Large White, Meishan and Pietrain, to a total of 415 individuals. Information about these breeds was obtained from the BIOPIG Consortium’s database of the Iberoamerican Porcine Biodiversity Project. This consortium is part of the Red CONBIAND. These data have previously been published by , , and . BIOPIG consortium a […]
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