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BiopLib

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A mature C programming library for manipulating protein structure. The library also provides a small number of functions for handling protein sequence as well as general purpose programming and mathematics. BiopLib transparently handles PDBML (XML) format and standard PDB files. The core of the BiopLib library is a reliable PDB parser that handles alternate occupancies and deals with compressed PDB files and PDBML files automatically. The library is designed to be as flexible as possible, allowing users to handle PDB data as a simple list of atoms, or in a structured form using chains, residues and atoms.

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BiopLib classification

BiopLib specifications

Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
3.4
Maintained:
Yes

BiopLib distribution

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BiopLib support

Documentation

Maintainer

  • Andrew Martin <>

Credits

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Publications

Institution(s)

Institute of Structural and Molecular Biology, Division of Biosciences, University College London, Darwin Building, Gower Street, London, UK

Funding source(s)

Recent work on BiopLib and BiopTools has been funded by a BBSRC Sparking Impact grant.

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