BioQRator statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases


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BioQRator specifications


Unique identifier OMICS_05236
Name BioQRator
Interface Web user interface
Restrictions to use None
Input data Documents, PubMed abstracts
Input format BioC
Output data Annotated documents
Output format BioC, CSV
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Sun Kim <>

Publications for BioQRator

BioQRator in pipeline

PMCID: 4674139
PMID: 26650466
DOI: 10.1371/journal.pcbi.1004630

[…] of a given protein using rule-based nlp []. ppinterfinder extracts medline abstracts on human proteins using co-occurrences of protein names, specific keyword dictionary, and pattern matching []. bioqrator can annotate ppi-relevant entity relationships from the biomedical publications []., in this paper, we propose the first, to our knowledge, approach to tm constraints for pp docking. […]

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BioQRator in publication

PMCID: 4074764
PMID: 24980129
DOI: 10.1093/database/bau053

[…] or the task may investigate issues not addressed by existing corpora. in either case, several manual annotation tools are available that work in the bioc format. examples include pubtator (, , ) and bioqrator (). pre and post-processing with brat2bioc, the brat ( can also be used to create a bioc corpus., a generic evaluation tool would be useful for bioc. an option […]

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BioQRator institution(s)
Department of Computer Engineering, Myongji University, Yongin, Korea; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA; Department of Biomedical Informatics, Asan Medical Center, Seoul, Korea; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Canada

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